PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019200.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HSF

Protein Properties

Length: 489aa MW: 54592.6 Da PI: 6.2582

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019200.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.4	1.2e-34	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i+ CCG019200.1 22 FLVKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKNIH 109 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k CCG019200.1 110 RRK 112 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-37	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-60	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-35	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-30	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MEAGTSSATT GGGGGGGGPA PFLVKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPEFARLL 60 LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIHR RKPIHSHSQP 120 QGSLVDPERA AYEEEIEKLA RDKAKLKASI LRFEQQRSSA KLQVEDLTQK IDTMQQRQEK 180 LLSFLEKAVQ NPTFVEHLAR KIEAMDFSAY SKKRRLPQVD HPMPIAENSL VENHSSSRPE 240 SNVIHQDFPD KLRLELSPAV SDINLVSHST QSSNEDGGSP QRKISEGNPK DALTRTSGLL 300 LAPETLELSD TGASYAFKVN PAVPKDIPAN GSPALHSLQS NLTSNEEVDG HISCQLNLSL 360 ASSPLQVNKN PYLTRIPQLG QEIGKSPESR FNESNKDSDI RASQNNINLG NEGRVLSSSQ 420 ETPSNNQAPP SAPVRVNDVF WEQFLTERPG YSDNEEASSN YRANPYDERE RRIGFGAPRN 480 AKNMEQLSL

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MEAGTSSATT GGGGGGGGPA PFLVKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPEFARLL  60
LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIHR RKPIHSHSQP  120
QGSLVDPERA AYEEEIEKLA RDKAKLKASI LRFEQQRSSA KLQVEDLTQK IDTMQQRQEK  180
LLSFLEKAVQ NPTFVEHLAR KIEAMDFSAY SKKRRLPQVD HPMPIAENSL VENHSSSRPE  240
SNVIHQDFPD KLRLELSPAV SDINLVSHST QSSNEDGGSP QRKISEGNPK DALTRTSGLL  300
LAPETLELSD TGASYAFKVN PAVPKDIPAN GSPALHSLQS NLTSNEEVDG HISCQLNLSL  360
ASSPLQVNKN PYLTRIPQLG QEIGKSPESR FNESNKDSDI RASQNNINLG NEGRVLSSSQ  420
ETPSNNQAPP SAPVRVNDVF WEQFLTERPG YSDNEEASSN YRANPYDERE RRIGFGAPRN  480
AKNMEQLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	13	111	17	129	Heat shock factor protein 1
5d5v_B	1e-21	13	111	17	129	Heat shock factor protein 1
5d5v_D	1e-21	13	111	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP013984	0.0	KP013984.1 Populus simonii heat shock transcription factor A5b (HsfA5b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003633.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-178	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9GFJ0	0.0	B9GFJ0_POPTR; Uncharacterized protein
STRING	POPTR_0001s32810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-179	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]