PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019181.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 602aa    MW: 67149.9 Da    PI: 7.4806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019181.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.7e-063173311226
                  TS--TTTTT-SS-SS CS
      zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                  +G C++G++C+F H+
  CCG019181.1 317 SGSCPRGEKCNFQHD 331
                  69************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073808.63E-377226No hitNo description
PROSITE profilePS5010314.014305333IPR000571Zinc finger, CCCH-type
SMARTSM003560.057307332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5309332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5309334IPR000571Zinc finger, CCCH-type
SMARTSM003560.026337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803342365IPR000571Zinc finger, CCCH-type
PfamPF046776.0E-38382491IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541976.24E-8384485IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.8E-5388503IPR011146HIT-like domain
PfamPF046762.1E-17521599IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.103.8E-5573595IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSPPRILLCG DVLGRLNQLF KRVQSVNKSA GPFDALFCVG QFFPDSAEQL EEFTGYIEGV  60
GGRSQIPLPT YFIGDYGVAA PKVLSTASRN SANLGFKMDG FKICDNLFWL RGSGKFTLHG  120
LSVVYLSGRQ SSSGQHFGTY SQDDVDALRA LAEEPGVVDL GVTNRASASD IPAGFLDTTG  180
SDSSVSELVA EIKPRYHFAG TKGVFYAREP YSNVDAVHVT RFFGLAMVGN KDKQKFIHAI  240
SPTPASTMSA AEISMKPPNT TLSPYTLVVD KTALKEDTKR STTTVSDSQY WRYDVSHKRH  300
KSGSGEGNKL CFKFIYSGSC PRGEKCNFQH DMDAREQYLG GVCLDFLIKG KCERGPDCNF  360
KHNLQNEGES HSRRRRGSEN DSGNRSKECW FCLSSPNVES HLIISIGEFY YCALPKGPLV  420
QDHVLVIPIE HAPCTLSLTQ QSNSELVKFQ NSLKLYYKNR GKEAVLFEWI SKRSSHANIQ  480
VVPVPSTKAA AVKDICNLAA EKLGFKFVVM KFNNSSDGRE WLRMQFDRNY SFFYVELTEG  540
TILSHSVEEN ENFPAQFGRE VLAGLLNMPE RADWRKCALS KDEETKMAEE FKKQFEELDP  600
NQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U5e-13387576673863CWF19-like protein 2
6id1_U5e-13387576673863CWF19-like protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878530.0AC187853.2 Populus trichocarpa clone Pop1-117C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016045.10.0PREDICTED: zinc finger CCCH domain-containing protein 64-like isoform X2
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A2K2A2U40.0A0A2K2A2U4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923