PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019143.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 711aa MW: 78716.3 Da PI: 6.6288

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019143.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	27	82	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++++++q+++Le++F+++++p++++r++L+++lgL+ +q+k+WFqN+R+++k CCG019143.1 27 KKGYHRHSNQQIQQLEKFFKECPHPDENQRRQLSRELGLEAKQIKFWFQNKRTQKK 82 5777899**********************************************988 PP
2	START	129.8	3.2e-41	225	444	3	206
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 a +aa+elv++ ++ep+W ks+ + +++ ++e +++s++v+m+ ++lv +ld + +W ++ k CCG019143.1 225 AASAADELVRLLRVNEPLWIKSPsdgryilDHVGYEK---------LyprdshfksanARVESSKDSAMVIMPGMDLVDMFLDAN-KWIDLFPtivtK 312 67899****************65555543333333.........3444445566888***********************.77777777777 PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 a t+ v++ g g lq m+ ++ lsplvp R+f+f+R ++ql g wvi+d+S d ++ Ra +lpSg++i++ksng skvtwveh CCG019143.1 313 ARTILVLEAGtagnrnGSLQMMYEQMHILSPLVPpREFYFLRLCQQLDPGEWVIADISYDFMRDGFP----SRAWRLPSGCMIQDKSNGCSKVTWVEH 406 *************************************************************9986....89********************* PP EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 v++++r+ h l+r l+ + a ga +w a l+r ce+ CCG019143.1 407 VEVDDRTQtHRLYRDLICGRSAYGAERWIASLRRICER 444 **999************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.93E-18	13	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-20	13	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	24	84	IPR001356	Homeobox domain
SMART	SM00389	5.9E-17	26	88	IPR001356	Homeobox domain
CDD	cd00086	7.94E-17	27	85	No hit	No description
Pfam	PF00046	5.5E-17	28	82	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.359	214	447	IPR002913	START domain
SuperFamily	SSF55961	3.43E-28	215	445	No hit	No description
CDD	cd08875	2.63E-105	218	443	No hit	No description
SMART	SM00234	5.2E-31	223	444	IPR002913	START domain
Pfam	PF01852	5.6E-35	225	444	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	9.6E-6	320	408	IPR023393	START-like domain
SuperFamily	SSF55961	8.93E-16	465	673	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MELSMGNNGG ASGDEHEAAS NSRNKGKKGY HRHSNQQIQQ LEKFFKECPH PDENQRRQLS 60 RELGLEAKQI KFWFQNKRTQ KKAQSERADN SVLRLENERI QCENLAIIEA LKNVICPACG 120 GPPFGEEERQ RSLQKLKQEN ARLKEEASLD YFNEHEKVST LLNKYIGKSI SQIDSLTLGA 180 GSSDGVLTTN PGIDLERNPG LDNSPLVYRR RGILDMEKAL MAETAASAAD ELVRLLRVNE 240 PLWIKSPSDG RYILDHVGYE KLYPRDSHFK SANARVESSK DSAMVIMPGM DLVDMFLDAN 300 KWIDLFPTIV TKARTILVLE AGTAGNRNGS LQMMYEQMHI LSPLVPPREF YFLRLCQQLD 360 PGEWVIADIS YDFMRDGFPS RAWRLPSGCM IQDKSNGCSK VTWVEHVEVD DRTQTHRLYR 420 DLICGRSAYG AERWIASLRR ICERLAFYKE ETAAARDFGG VITSPEGRKS IVNLAHRMVK 480 IFFASLGMSG KLDFPQFSEV NNSGVRVAIR KNTEQGQPVG MVVSAATSLW LPLSPQIVFN 540 FFKDERSRIQ WDVLSNSNPV HVISHISNGT NPGNCISITR PFIPTENNML ILQESCTDSS 600 GSMVVYAPLD IPAMNMVIDG ADSSIIPILP SGFVISGDGH PDTGGDSSTS TSSTGADSGG 660 SLLTVAFQIL VAGPNATSST ELNMESVATV NTLISTTVLK IKAALNCSNL G

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MELSMGNNGG ASGDEHEAAS NSRNKGKKGY HRHSNQQIQQ LEKFFKECPH PDENQRRQLS  60
RELGLEAKQI KFWFQNKRTQ KKAQSERADN SVLRLENERI QCENLAIIEA LKNVICPACG  120
GPPFGEEERQ RSLQKLKQEN ARLKEEASLD YFNEHEKVST LLNKYIGKSI SQIDSLTLGA  180
GSSDGVLTTN PGIDLERNPG LDNSPLVYRR RGILDMEKAL MAETAASAAD ELVRLLRVNE  240
PLWIKSPSDG RYILDHVGYE KLYPRDSHFK SANARVESSK DSAMVIMPGM DLVDMFLDAN  300
KWIDLFPTIV TKARTILVLE AGTAGNRNGS LQMMYEQMHI LSPLVPPREF YFLRLCQQLD  360
PGEWVIADIS YDFMRDGFPS RAWRLPSGCM IQDKSNGCSK VTWVEHVEVD DRTQTHRLYR  420
DLICGRSAYG AERWIASLRR ICERLAFYKE ETAAARDFGG VITSPEGRKS IVNLAHRMVK  480
IFFASLGMSG KLDFPQFSEV NNSGVRVAIR KNTEQGQPVG MVVSAATSLW LPLSPQIVFN  540
FFKDERSRIQ WDVLSNSNPV HVISHISNGT NPGNCISITR PFIPTENNML ILQESCTDSS  600
GSMVVYAPLD IPAMNMVIDG ADSSIIPILP SGFVISGDGH PDTGGDSSTS TSSTGADSGG  660
SLLTVAFQIL VAGPNATSST ELNMESVATV NTLISTTVLK IKAALNCSNL G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269\|PubMed:16778018, ECO:0000269\|PubMed:18451323, ECO:0000269\|PubMed:23095885, ECO:0000269\|PubMed:24821957, ECO:0000269\|PubMed:24824485, ECO:0000269\|PubMed:25564655, ECO:0000269\|PubMed:25752924}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005937.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC8-like
Swissprot	Q9FX31	0.0	HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBL	A0A2K2AR95	0.0	A0A2K2AR95_POPTR; Uncharacterized protein
STRING	POPTR_0004s07310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1026	33	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	0.0	homeodomain GLABROUS 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Khosla A, et al. HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23. Plant Cell, 2014. 26(5): p. 2184-2200 [PMID:24824485] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655] Cai XT,Xu P,Wang Y,Xiang CB Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis. J Integr Plant Biol, 2015. 57(12): p. 1017-30 [PMID:25752924] Yu LH, et al. Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field. Plant Biotechnol. J., 2016. 14(1): p. 72-84 [PMID:25879154] Zhu Z, et al. Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance. Front Plant Sci, 2016. 7: p. 1285 [PMID:27625663] Liu Y, et al. Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza. Protoplasma, 2017. 254(4): p. 1617-1625 [PMID:27915455] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621] Zheng G, et al. Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.). Front Plant Sci, 2017. 8: p. 2125 [PMID:29326737]