PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019123.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 299aa MW: 32082.4 Da PI: 9.1344 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.9e-37 | 80 | 178 | 3 | 99 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaaksk 98 k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + + ++ nsssg +++a+k++ CCG019123.2 80 LKRPSTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvNGTLKIPTTTNSSSGLGQPNATKNR 177 6899***********************************************************88888444322222222222222222222222222 PP TCP 99 k 99 k CCG019123.2 178 K 178 2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-30 | 84 | 174 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.187 | 85 | 139 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MASTQKQELG EDEDMRTVDL RINSRELPNI RACPTNRKDC NDMSAALKEE PSTEERSPPP 60 PLGVMPLAAV SMPLTTVTPL KRPSTKDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS 120 DGETIRWLLE HAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNSSSGLGQ PNATKNRKRP 180 ANSEYVDVND TVSVSASLVP VTTQQPPPPA TTNSCGSATG FSAHVGHTIQ CCRSRGVLYV 240 AVPVSGSMTA KGISMMAPSS SSACTVSTTS TTTNRTPQML RDFSLEIYDK QELQFMSRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450071.1 | 1e-137 | transcription factor TCP9 | ||||
Swissprot | O64647 | 9e-73 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | B9GPT7 | 1e-135 | B9GPT7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s15360.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-71 | TCP family protein |