PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019117.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 458aa MW: 51343.7 Da PI: 6.3666 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 68.6 | 1e-21 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp l+Wt+eLH+rF++a++ L G + Pk+il++m+v gL e+v SHLQkYRl CCG019117.2 209 KPGLVWTNELHNRFLQAIRIL-GVDGVHPKKILQHMNVSGLKKENVSSHLQKYRL 262 57799****************.9*******************************8 PP | |||||||
2 | Response_reg | 57.8 | 6.3e-20 | 25 | 132 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+v+ +p+ ++++ ++l+ gy ev++a+++++al++l ke +++lil+ +++md +e++++ r+ +++lpi+v++a ++ + +l l Ga CCG019117.2 25 ILVVESDPTCLRIVSKMLQAFGY-EVTTATQATDALHILweKEDEINLILIETHLSDMDQYEIIETVRAMSSSLPIVVFSADNNVSAMLGWLYKGAA 120 89*********************.*************99644444**************************************************** PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 +l+Kp+ ++++ CCG019117.2 121 LYLMKPIVKNDV 132 ******987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.69E-23 | 21 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-25 | 21 | 170 | No hit | No description |
SMART | SM00448 | 2.0E-11 | 23 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 28.953 | 24 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.1E-15 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.55E-17 | 26 | 127 | No hit | No description |
SuperFamily | SSF46689 | 1.08E-16 | 207 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 208 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-20 | 209 | 262 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 213 | 261 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MTSEQFLSFE VTKNKASSFA KGVRILVVES DPTCLRIVSK MLQAFGYEVT TATQATDALH 60 ILWEKEDEIN LILIETHLSD MDQYEIIETV RAMSSSLPIV VFSADNNVSA MLGWLYKGAA 120 LYLMKPIVKN DVKNLWQLTY RKKKKTTVSS VGSNSFHAGL AEENASSVTA GIPSLLSTTG 180 KIDQMGKTKE LEEIDSDDED NDNLTVLKKP GLVWTNELHN RFLQAIRILG VDGVHPKKIL 240 QHMNVSGLKK ENVSSHLQKY RLSWKWEQDA TQKTMIRDHH PSLTLNLQGE FSQFTNPQFS 300 MAISQSEHRN NIQNNLCSPV SMHSRGSAHS LTRVNTNSDG MLIPSYGQQS KQLDHTYPNC 360 SHTGIGTNND GNLASLGQKR NHNVEEHLNQ GTTFSNVGTH GPTFLGNSQQ QLQFPLLQPQ 420 PLPEKEDESD IPNNITEARN EFLVTKNEFL DNPNNDLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-15 | 205 | 265 | 1 | 61 | ARR10-B |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183426 | 0.0 | AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023448.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
Refseq | XP_011023449.1 | 0.0 | PREDICTED: two-component response regulator ARR14-like | ||||
TrEMBL | A0A3Q9EE42 | 0.0 | A0A3Q9EE42_POPTO; Response regulator 2,ARR-B | ||||
STRING | POPTR_0002s15430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14554 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-42 | response regulator 2 |