PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018943.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 263aa MW: 28868.9 Da PI: 8.9533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018943.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ CCG018943.1 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 80 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	19	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEEMTSNTCG RPVLERKARP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRST SSSVAASAAP SKLPDLNPPN LSHFSSQNPK SGHEGQDLNL 120 AFPAMQDSQG ISHYTEVAKT ENNNHNQHNS YSSPYTSSPI SALELLRSGI ASRGLNSFIP 180 TPMPDSNTLY SSGGFPLQEL KPTLSFSLDG LGSRYGVQEH NGRLLFPFGE LKQLSSTNEV 240 DQNKGQGTSS TGYWNGMFGG GSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451836.1	0.0	dof zinc finger protein DOF2.5 isoform X3
Refseq	XP_024451838.1	0.0	dof zinc finger protein DOF2.5 isoform X4
Refseq	XP_024451839.1	0.0	dof zinc finger protein DOF2.5 isoform X5
Refseq	XP_024451840.1	0.0	dof zinc finger protein DOF2.5 isoform X5
Swissprot	Q43385	1e-72	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A3N7G3M3	1e-152	A0A3N7G3M3_POPTR; Uncharacterized protein
STRING	POPTR_0002s17490.1	1e-153	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	6e-75	Dof family protein