PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018779.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARR-B
Protein Properties Length: 599aa    MW: 67182.3 Da    PI: 6.2441
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018779.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.71.1e-17200271155
      G2-like   1 kprlrWtpeLHerFveaveqLGGse.......kAt..........PktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ eLH++Fv+av+q+G          +A           Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  CCG018779.1 200 KARVVWSVELHQKFVKAVNQIGFDTtslscfyRAMtsnvclaevgPKKILDLMNVPRLTRENVASHLQKYRL 271
                  68*******************743222222223323444444555**************************8 PP
2Response_reg79.21.4e-26201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D+ mp+mdG++ll+     e++lp+i+++  ge + + + ++ Ga 
   CCG018779.1  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKggYDIVISDVYMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGVQHGAC 114
                   89*********************.***************999999*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
   CCG018779.1 115 DYLLKPIRMKELRN 128
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-4317141No hitNo description
SuperFamilySSF521725.98E-3517142IPR011006CheY-like superfamily
SMARTSM004481.0E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.1719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2320129IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.71E-3021134No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25197276IPR009057Homeodomain-like
SuperFamilySSF466898.06E-14198275IPR009057Homeodomain-like
PfamPF002493.4E-6202270IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-11242271IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MMENGFSSPR NDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA RDALNLLRER  60
KGGYDIVISD VYMPDMDGFK LLELVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIEILEGN ESFQMTRNGS DQYEDGHFLC GEDLTLIKKR  180
KDIESKHDEK DIGDNTSTKK ARVVWSVELH QKFVKAVNQI GFDTTSLSCF YRAMTSNVCL  240
AEVGPKKILD LMNVPRLTRE NVASHLQKYR LYLSRLQKGN DFNNPDGMVK QSDSPLSDSA  300
GSFGSQNSIN LQPTDVSNGC YGFSGSSLVL QNVDPRSHDG DRKILVTTPV AEPKRGLTVD  360
APNPRKPRIS QMEFGHPIAP PRSEVNFATF DSSFPSKYPW CGIPGIPLKQ EHNPLHLNDG  420
FSHLPMPRQK QLTRADYPQP APAISSAPSL TEREIGCPVK IKPSRNDYSS NACHVSSTAS  480
AVDSIPLQTK TNSTNHQVSS TSSMENQGLN MNCLTGVESS RKNINLGMPP FAPLDKDLQV  540
CFVPGDYYMN LGLQNIEVPE YFDPSLLTDV PIHLNDGLRF DYEFYDPTEY SLIDQSLFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16196276163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081430.0FN908143.1 Populus x canadensis mRNA for putative B-type response regulator 21 (rr21 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042332.10.0PREDICTED: two-component response regulator ARR11
TrEMBLA0A3Q9EF480.0A0A3Q9EF48_POPTO; Response regulator 11
STRINGPOPTR_0008s18130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-129response regulator 11