PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018623.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 281aa    MW: 31725.6 Da    PI: 8.1095
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018623.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.5e-3149105259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  + v+YkeC++NhAas+Ggha DGCgEfmp  g++gt + l+CaACgCHRnFHRre+++
  CCG018623.1  49 NVVKYKECMRNHAASIGGHANDGCGEFMPR-GDDGTRDWLTCAACGCHRNFHRRESST 105
                  5799*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1851105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2951103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-2752102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5453102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.8E-20186254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30186254IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26194250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDLSVVPYQQ QQHHKSETVH DQDVDIVLHT KPITTVISNP KATKDPCKNV VKYKECMRNH  60
AASIGGHAND GCGEFMPRGD DGTRDWLTCA ACGCHRNFHR RESSTKRQHQ QQLLLSPPPL  120
QPQQFLLYGA PTTKNMNPVH DFMSRPHDED DDDNGLDDLD NDRRSETPER GEVNVMGSGG  180
KGFMVKSTSG SSNKRFRTKF TQEQKERMLE FAEKIGWRIQ KHDDMALNQF CNEVGIKRNV  240
LKVWMHNNKN AHRRRDGVPP VSAEAPPPPL PPSAPPQPVG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-281922511675ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001095.10.0PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLU5FSR80.0U5FSR8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-53homeobox protein 22