PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018590.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 583aa    MW: 64859 Da    PI: 6.1685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018590.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.21.1e-1292135821373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+a+++++ ++ ++l ++ +  +s +g+p+qRl ay+ e+L ar  +s+ ++y++l+++e +    ++ l+++++++e++P+lkf++++a
  CCG018590.1 213 LKQLLIACAKALAENNVSAFDKLTENARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPE---GKDLLSYMHILYEICPYLKFGYMAA 307
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le+++ rL+ + e++++p+ef+  v     d++ e+L
  CCG018590.1 308 NGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGGGLEAVAGRLSAISEKFNIPVEFHG-VPVFAPDVTKEML 404
                  ****************************************************99999999************************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh+++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+ +eri+vE+++l+r
  CCG018590.1 405 DVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLPRDRKERISVEQHCLAR 502
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  + vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr+++ + y++ e++g+++lgWkdr+L+s+SaW
  CCG018590.1 503 DMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582
                  *****************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.711187564IPR005202Transcription factor GRAS
PfamPF035143.7E-127213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESHQYFGYG VTGAGLSYSS SYPSVPSIPN RLFGSLKFDI GNSPSSPFYT QFECDTYTAT  60
LSDSQECYSS TDNLSGVSPS RNSSLESNSY FNRPSPSVDC RLESLQLFSG GTSSLQDASS  120
SQNIKHALQE LETALMGPDD DEDLNTSNAS LGESSRPQTS DQKPRAWRQG SHVIQNQTSF  180
VSRQRQLGEG AHVEKRQKSM EEVPLHGIPP GDLKQLLIAC AKALAENNVS AFDKLTENAR  240
SVVSISGEPI QRLGAYLIEG LVARKESSGA NIYRTLKCRE PEGKDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPGGAPH VRITGIDDPV  360
SKYARGGGLE AVAGRLSAIS EKFNIPVEFH GVPVFAPDVT KEMLDVRPGE ALAVNFPLQL  420
HHTPDESVDV NNPRDGLLRM IKSFNPKVVT LVEQESNTNT TPFVTRFVET LNYYLAMFES  480
IDVTLPRDRK ERISVEQHCL ARDMVNVIAC EGKERVERHE LFRKWKSRFM MAGFQQYPLS  540
TYVNSVIKSL LRTYSEHYTL VEKDGAMLLG WKDRNLISAS AWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6122058226378Protein SCARECROW
5b3h_A3e-6122058225377Protein SCARECROW
5b3h_D3e-6122058225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016013.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_011048259.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1X9QM810.0A0A1X9QM81_9ROSI; Phytochrome A signal transduction 1
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]