PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018584.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 269aa    MW: 29553 Da    PI: 8.5636
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018584.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.54.8e-3157113259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  + vrYkeClkNhAa++Gg+a+DGCgEf+p  geeg+ +alkC+AC+CHRnFHR+e + 
  CCG018584.1  57 KVVRYKECLKNHAAAIGGNATDGCGEFIPG-GEEGSLEALKCSACNCHRNFHRKEIDG 113
                  679**************************9.999********************9876 PP

2Homeobox18.53.5e-06204259152
                  TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                  +r Rt+ft+eq + + ++ e    k +++ ++  + L ++lg++ r+ kvW +N +
  CCG018584.1 204 KRFRTKFTEEQKQKMLNFAEkagwKMQKLEESVVQGLCQELGIKRRVLKVWMHNNK 259
                  789************8866677778*****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2359114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2859111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2960111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.97961110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-28198264IPR009057Homeodomain-like
SuperFamilySSF466894.07E-19201264IPR009057Homeodomain-like
PROSITE profilePS500718.535201265IPR001356Homeobox domain
TIGRFAMsTIGR015651.8E-25203259IPR006455Homeodomain, ZF-HD class
CDDcd000860.00131204257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDESSLQKDM PISRNGSYAG GNGHSHTVTS AAAAAAQVTT NEHSPSSQQE DQRPYKKVVR  60
YKECLKNHAA AIGGNATDGC GEFIPGGEEG SLEALKCSAC NCHRNFHRKE IDGECSYDCH  120
HHYPIMSNIG SGRLISGHHN GIIGSPPQGY PTSSFISSRA PPPHQVVVSY KNGGANAITS  180
ESDEKEEDNG GGILTTRPVE KLRKRFRTKF TEEQKQKMLN FAEKAGWKMQ KLEESVVQGL  240
CQELGIKRRV LKVWMHNNKH NYVKNSTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-202022611675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1853610.0AC185361.2 Populus trichocarpa clone Pop1-55D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005585.10.0PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647221e-67ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLB9H4310.0B9H431_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-69homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]