PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 269aa MW: 29553 Da PI: 8.5636 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.5 | 4.8e-31 | 57 | 113 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeClkNhAa++Gg+a+DGCgEf+p geeg+ +alkC+AC+CHRnFHR+e + CCG018584.1 57 KVVRYKECLKNHAAAIGGNATDGCGEFIPG-GEEGSLEALKCSACNCHRNFHRKEIDG 113 679**************************9.999********************9876 PP | |||||||
2 | Homeobox | 18.5 | 3.5e-06 | 204 | 259 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ ++ + L ++lg++ r+ kvW +N + CCG018584.1 204 KRFRTKFTEEQKQKMLNFAEkagwKMQKLEESVVQGLCQELGIKRRVLKVWMHNNK 259 789************8866677778*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-23 | 59 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-28 | 59 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-29 | 60 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.979 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 198 | 264 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.07E-19 | 201 | 264 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.535 | 201 | 265 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.8E-25 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00131 | 204 | 257 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDESSLQKDM PISRNGSYAG GNGHSHTVTS AAAAAAQVTT NEHSPSSQQE DQRPYKKVVR 60 YKECLKNHAA AIGGNATDGC GEFIPGGEEG SLEALKCSAC NCHRNFHRKE IDGECSYDCH 120 HHYPIMSNIG SGRLISGHHN GIIGSPPQGY PTSSFISSRA PPPHQVVVSY KNGGANAITS 180 ESDEKEEDNG GGILTTRPVE KLRKRFRTKF TEEQKQKMLN FAEKAGWKMQ KLEESVVQGL 240 CQELGIKRRV LKVWMHNNKH NYVKNSTSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 8e-20 | 202 | 261 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC185361 | 0.0 | AC185361.2 Populus trichocarpa clone Pop1-55D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005585.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 3-like | ||||
Swissprot | O64722 | 1e-67 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | B9H431 | 0.0 | B9H431_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s14270.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-69 | homeobox protein 21 |
Publications ? help Back to Top | |||
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