PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018539.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 380aa    MW: 41982.1 Da    PI: 6.8743
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018539.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-072062437
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........H 37
                 ++C+ ++   +  fC+ ++ +lC +C +++H++         H
  CCG018539.1 20 KRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSqvnskimsrH 62
                 79******99********************8554555555555 PP
2zf-B_box26.71.1e-0865110342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  CCG018539.1  65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 110
                  689*****************************66899999999986 PP
3CCT70.25.3e-24307350144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG018539.1 307 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 350
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6371767IPR000315B-box-type zinc finger
SMARTSM003366.9E-51756IPR000315B-box-type zinc finger
PfamPF006439.6E-62063IPR000315B-box-type zinc finger
CDDcd000212.87E-62167No hitNo description
PROSITE profilePS5011910.8563110IPR000315B-box-type zinc finger
SMARTSM003369.9E-1663110IPR000315B-box-type zinc finger
PfamPF006439.9E-765110IPR000315B-box-type zinc finger
CDDcd000213.30E-966110No hitNo description
PROSITE profilePS5101716.638307349IPR010402CCT domain
PfamPF062033.9E-18307349IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGIEVESLKN LTGGWSVGAK RCDSCKTAAA AAFCRADSAF LCLNCDTKIH HSQVNSKIMS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFYNSAESI  120
VKTSTAFSIL IPGENGVSGY DQNNDVEGVS WLSQSNHTTH DHNSKLRIEN PVVKTGDMFF  180
PEIDPFLEFK YQNSIDESYE QIHGGAGADS VVPVQTKPAP LPVINHESCF DIDFCRSKLT  240
SFNYSPQSRS HSVSPSSLDV GVVPDGNSMS DISYPFSRSM NTTIDPSMPL SGCTAYQAAT  300
QLAGIDREAR VLRYKEKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EMESDTDNLF  360
NSPSSVPFMA DTQYGVVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247941e-102CU224794.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018162.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-120COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLU5FG520.0U5FG52_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-108CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]