PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018490.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 352aa    MW: 39882.2 Da    PI: 8.1897
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018490.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.6e-124399155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  CCG018490.1 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAAHAYDLAALKYWG 99
                 57*******************99998888888888********************98 PP
2AP251.33e-16142193155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  CCG018490.1 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 193
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-84399IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1543109IPR016177DNA-binding domain
PROSITE profilePS5103218.58444107IPR001471AP2/ERF domain
SMARTSM003801.2E-2044113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-1344108IPR001471AP2/ERF domain
PRINTSPR003674.0E-64556IPR001471AP2/ERF domain
CDDcd000183.59E-24142203No hitNo description
PfamPF008475.5E-12142193IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18142203IPR016177DNA-binding domain
SMARTSM003801.2E-24143207IPR001471AP2/ERF domain
PROSITE profilePS5103218.334143201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17143202IPR001471AP2/ERF domain
PRINTSPR003674.0E-6183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKLSQQNTK NTASNNKNTT NGVTKVKRTR RSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QSKKGRQGAY DDEEAAAHAY DLAALKYWGP ETILNFPLST YQNELKEMEG  120
QSREECIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
ATAYDMAAIE YRGLNAVTNF DLSRYIKWLK PNQNNSDSNN DLNLPNPILG TDSSTHPNPK  240
QELGTTFLQN QQTYQPSETT LTQPRPATNP SSALGLLLQS SKFKEMMEMT AVTDGPPTPP  300
SGLDLTPCSF LEDVQTYFDC HDSRNYGDQG DDMIFGDLRS FVPPMFQCDF ET
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018218.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-111AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLB9IM930.0B9IM93_POPTR; Uncharacterized protein
STRINGPOPTR_0018s11110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-93ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]