PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018440.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 320aa    MW: 36334.4 Da    PI: 9.446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018440.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B386.42.4e-27140238187
                  EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f+k+ltpsdv+k++r+v+pkkfa ++              +k  +++l + d+s + W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F+l +
  CCG018440.1 140 FQKELTPSDVGKLNRIVIPKKFAIKYfphisesaeeveAADKMDGVMLAFCDKSMKLWKFRYCYWKSSQSYVFTRGWNRFVKEKKLKANDTISFSLCE 237
                  99**************************999988877755666999999**********************************************876 PP

                  S CS
           B3  87 r 87 
                  r
  CCG018440.1 238 R 238
                  4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.7713173IPR001471AP2/ERF domain
SMARTSM003803.6E-43479IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-73771IPR016177DNA-binding domain
CDDcd000181.84E-113975No hitNo description
Gene3DG3DSA:3.30.730.107.2E-103973IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-33136240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-28139240IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-25139239No hitNo description
PfamPF023627.4E-25140238IPR003340B3 DNA binding domain
SMARTSM010199.7E-22140245IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647140255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEETVSLIS NGETSVVEEF SDSNSSTHPF PASKRAGLAR IWLGTFKSEK EAAMAYDSAA  60
IKLRSGDSRR NSPVTDVTVE ESKFQTYFST EVVLNMIKDG TYQCKFANFT RTCSQSVETE  120
LSLKLMIPQS YQGLTCKQLF QKELTPSDVG KLNRIVIPKK FAIKYFPHIS ESAEEVEAAD  180
KMDGVMLAFC DKSMKLWKFR YCYWKSSQSY VFTRGWNRFV KEKKLKANDT ISFSLCERGE  240
MVDSAAQTFN MIDVNNHENS SRIAELSSQS IASKVELQLH LGPRIARDST VRKKERMRGA  300
NKRKQNAEKS GFKLFGIQII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-3113623410101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158400.0AC215840.1 Populus trichocarpa clone POP043-C12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446356.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
RefseqXP_024446357.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P56e-78RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3N7GB040.0A0A3N7GB04_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20040.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-80RAV family protein