PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 692aa MW: 76002.9 Da PI: 5.784 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.9 | 2.2e-28 | 192 | 245 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQk+Rl CCG018421.1 192 KPRVVWSVELHQKFVSAVNQL-GLDKAVPKKILDLMNVDGLTRENVASHLQKFRL 245 79*******************.********************************8 PP | |||||||
2 | Response_reg | 86.4 | 8.1e-29 | 8 | 116 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l+k +y ev+++ ++ ale+l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i++++hg++e + + + Ga CCG018421.1 8 VLAVDDDPICLKVLENLLRKCQY-EVTTTNQAVTALEMLRENRnkYDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSSHGDKEFVYKGITHGAV 102 799********************.***************999889*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ eel + CCG018421.1 103 DYLLKPVRLEELKN 116 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.2E-161 | 1 | 692 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 6.7E-43 | 5 | 139 | No hit | No description |
SuperFamily | SSF52172 | 2.13E-37 | 5 | 131 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.3E-36 | 6 | 118 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.508 | 7 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.6E-26 | 8 | 116 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.50E-30 | 9 | 122 | No hit | No description |
PROSITE profile | PS51294 | 12.608 | 189 | 248 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-30 | 189 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-19 | 190 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 192 | 245 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-7 | 194 | 243 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MFPVGMRVLA VDDDPICLKV LENLLRKCQY EVTTTNQAVT ALEMLRENRN KYDLVISDVN 60 MPDMDGFKLL ELVGLEMDLP VIMLSSHGDK EFVYKGITHG AVDYLLKPVR LEELKNIWQH 120 VIRRKKWYPQ DQNRSPNQDK GGDGAGEGDQ VTSTGSADQN GKVNRKRKDQ DEEEEGEGED 180 GNDNEESGNQ KKPRVVWSVE LHQKFVSAVN QLGLDKAVPK KILDLMNVDG LTRENVASHL 240 QKFRLYLKRL SCGANQQPNM VAGFGAKDSS YLRMGSLDGF GDFRSVPGPG QLSTTSLSSY 300 PPGSLLGRLN SPGGLTLQAI ASPGLLQPGH SRSLNNPLNT LGKLQPGLLQ TNRGSTNLFQ 360 GISSALEPKQ LQLKSMNHIG DFNHKGDATS FTLAGCFPDV KVTIGSLGNT ISSAANNPQM 420 LHVNPQQNQT RRSLATQSSL SMPSLNQESF DVGVRGSSNF LDHSRCDDNW QGVVQMSTFP 480 SNSLPLGEPF RHDPLPTSTR RDNISSSTSH IVNNPLDFSS SGSLTAPLED SRLDMQGQAD 540 LVGNIFHNTN YTSKNRWGEN SQNYNPCLNG SFGAMNSLVS GNGSMSPLSQ SMDQRKRFDA 600 SVLGQSNSGT LSMFQHLEAE NSALDRTGMR IPKMRSNEDF LLEQTKSPDG FVQNNYESLD 660 DIVNAMIKRD QNDGVLMDGE FGFESYSPGS CI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-26 | 190 | 251 | 3 | 64 | ARR10-B |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908142 | 0.0 | FN908142.1 Populus x canadensis mRNA for putative B-type response regulator 19 (rr19 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017979.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X1 | ||||
TrEMBL | B9IMH1 | 0.0 | B9IMH1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s11960.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-114 | response regulator 12 |