PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018340.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 676aa MW: 76528.6 Da PI: 7.1367

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018340.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.3	1.1e-12	537	602	27	95
---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++e++ tled++g W+++l + +g++ ++kGW++F++ Lk gD +vF+++g+s+f v+ CCG018340.1 537 DDIPENKPRATLEDPNGTLWTIEL-LKSADGMVRFQKGWQDFADFYSLKKGDLLVFEYKGNSRF--SVS 602 3344444489************.5666677**************************9999..554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.200	2.7E-4	111	167	IPR013320	Concanavalin A-like lectin/glucanase domain
Gene3D	G3DSA:2.60.120.200	2.7E-4	206	232	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF56112	1.32E-75	210	502	IPR011009	Protein kinase-like domain
PROSITE profile	PS50011	38.096	227	507	IPR000719	Protein kinase domain
SMART	SM00220	3.7E-34	227	501	IPR000719	Protein kinase domain
Pfam	PF07714	2.8E-49	232	499	IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE pattern	PS00107	0	233	259	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:3.30.200.20	2.0E-24	233	308	No hit	No description
CDD	cd14066	1.80E-93	233	499	No hit	No description
Gene3D	G3DSA:1.10.510.10	7.6E-40	309	505	No hit	No description
PROSITE pattern	PS00108	0	348	360	IPR008271	Serine/threonine-protein kinase, active site
SMART	SM01019	0.0016	531	607	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-10	537	601	IPR003340	B3 DNA binding domain
CDD	cd10017	1.87E-13	539	605	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.2E-14	540	605	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-15	541	605	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.435	547	607	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence Send to blast
MAMNALILLL LVQFPIILAS RFSIHSKVCG SDHIAYSNFH GYELFYINGE LKDKESFCKA 60 FHFLDVNACI FENYLGSSSS GLDPDLSLAD FPLKRQRNLL QKEGREESTS HYLSQDTPKE 120 KKDDPETLST PYKAGLAVAG VVVMCCGFLC PCLYKKRKPA TPTVLEKDPN SLDSAPSFNV 180 NPASEKVLST PHRVPPSPSR FSPSPKLSRL GSVHLNLSQV ARATRNFSPS LQIGEGGFGI 240 VYKAQLDNGQ LVAIKRAKKE YFVNLQTEFS SEVELLAKID HRNLVKLLGY VRNEDERLII 300 TEYVPNGTLR EHLDVLHGKI LDFNQRLEIS IDVAHGLTYL HLYAEKQIIH RDVKSSNILL 360 TESMRAKVAD FGFARMGPVD SDQTHISTKV KGTVGYLDPE YMRTYQLTPK SDVYSFGILL 420 LEILTGRRPV EMKKPADERV TLRWVFRKYE EGNVVDMADP LMEEVVDAEI LSKMFALAIH 480 CAAPIRTERP DMKVVVEQLW GIRADYLKGV KKGERERERD GSLFEPGEYL FIKRIHDDIP 540 ENKPRATLED PNGTLWTIEL LKSADGMVRF QKGWQDFADF YSLKKGDLLV FEYKGNSRFS 600 VSMYKEMDYP AGSIDSVSSN QFGHHEEDME DEDYLELLAK LPKQKSELSY SFSKPASDSP 660 SCMIIKSGRS RKKLKS

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence Send to blast

MAMNALILLL LVQFPIILAS RFSIHSKVCG SDHIAYSNFH GYELFYINGE LKDKESFCKA  60
FHFLDVNACI FENYLGSSSS GLDPDLSLAD FPLKRQRNLL QKEGREESTS HYLSQDTPKE  120
KKDDPETLST PYKAGLAVAG VVVMCCGFLC PCLYKKRKPA TPTVLEKDPN SLDSAPSFNV  180
NPASEKVLST PHRVPPSPSR FSPSPKLSRL GSVHLNLSQV ARATRNFSPS LQIGEGGFGI  240
VYKAQLDNGQ LVAIKRAKKE YFVNLQTEFS SEVELLAKID HRNLVKLLGY VRNEDERLII  300
TEYVPNGTLR EHLDVLHGKI LDFNQRLEIS IDVAHGLTYL HLYAEKQIIH RDVKSSNILL  360
TESMRAKVAD FGFARMGPVD SDQTHISTKV KGTVGYLDPE YMRTYQLTPK SDVYSFGILL  420
LEILTGRRPV EMKKPADERV TLRWVFRKYE EGNVVDMADP LMEEVVDAEI LSKMFALAIH  480
CAAPIRTERP DMKVVVEQLW GIRADYLKGV KKGERERERD GSLFEPGEYL FIKRIHDDIP  540
ENKPRATLED PNGTLWTIEL LKSADGMVRF QKGWQDFADF YSLKKGDLLV FEYKGNSRFS  600
VSMYKEMDYP AGSIDSVSSN QFGHHEEDME DEDYLELLAK LPKQKSELSY SFSKPASDSP  660
SCMIIKSGRS RKKLKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3tl8_A	5e-55	198	501	13	316	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D	5e-55	198	501	13	316	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G	5e-55	198	501	13	316	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H	5e-55	198	501	13	316	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A	2e-55	198	501	5	308	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A	2e-55	198	501	5	308	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017855.1	0.0	PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X1
Swissprot	Q9ASQ5	1e-178	CRCK3_ARATH; Calmodulin-binding receptor-like cytoplasmic kinase 3
TrEMBL	U7DZD5	0.0	U7DZD5_POPTR; Kinase family protein
STRING	POPTR_0025s00730.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.3	5e-15	WRKY family protein

Publications ? help Back to Top
Yang T,Chaudhuri S,Yang L,Chen Y,Poovaiah BW Calcium/calmodulin up-regulates a cytoplasmic receptor-like kinase in plants. J. Biol. Chem., 2004. 279(41): p. 42552-9 [PMID:15292241]