PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018236.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 24512 Da PI: 9.0834 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.2 | 7.2e-14 | 26 | 70 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ Lre +P + Kl+Ka+i + A++YI++Lq CCG018236.2 26 TVSERNRRKKLNDKLYALREAVPRiS------KLDKASIIKDAIDYIQDLQ 70 568*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.885 | 20 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-17 | 23 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.53E-11 | 23 | 73 | No hit | No description |
Pfam | PF00010 | 1.9E-11 | 26 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-15 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-18 | 26 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MNQTSCQIYD SSSPDGAASA LASRNTVSER NRRKKLNDKL YALREAVPRI SKLDKASIIK 60 DAIDYIQDLQ KQETRLQAEI MELESERSEK DKDYEFERGL PVFLTSKKTR YDQISDQREP 120 RSNPIEVHQL RVSAIGERTL FVSLTCSKAR EAMIRICEVF ESLKLKIITA SVTTVSGMVK 180 KTVLIEADVE ERDHLKSRIE RAIKALSGPY NPQSM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 32 | RNTVSERNRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144513 | 0.0 | EF144513.1 Populus trichocarpa clone PX0019_O05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017677.1 | 1e-156 | PREDICTED: transcription factor bHLH35-like isoform X1 | ||||
Swissprot | Q2HIV9 | 9e-64 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A3N7G7Q0 | 1e-140 | A0A3N7G7Q0_POPTR; Uncharacterized protein | ||||
TrEMBL | A9P8Q1 | 1e-140 | A9P8Q1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s13840.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-66 | bHLH family protein |