PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 727aa MW: 82034.5 Da PI: 10.0601 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.8 | 5.9e-11 | 507 | 551 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps++ +e L+k+lgL+ +V+ WF+N R+ CCG018230.1 507 PDAVEKLRQVFAENELPSRTVKENLSKELGLEPGKVSKWFKNSRY 551 67899**************************************97 PP | |||||||
2 | PHD | 34.9 | 3.5e-12 | 237 | 291 | 1 | 50 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ +++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++ CCG018230.1 237 FCAKCKLneVSQDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCDC 291 699998866667********56********************9999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 5.09E-13 | 229 | 294 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.3E-11 | 233 | 291 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.238 | 235 | 292 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 8.1E-8 | 237 | 290 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 5.65E-31 | 237 | 289 | No hit | No description |
Pfam | PF00628 | 1.5E-9 | 237 | 291 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 238 | 289 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 494 | 550 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.21E-10 | 495 | 556 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.276 | 496 | 556 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-10 | 498 | 560 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.43E-9 | 499 | 560 | No hit | No description |
Pfam | PF00046 | 1.9E-8 | 507 | 551 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MGDSGKKSKQ QDLHESSPSD TVNGSLLIKS LKIKKGGKLS HRKSKKAKAK PRLKTIINSS 60 VSKKKVTPKK GIRNGSTSRR LIHRKILHKA LDKKASRNGA SSELQGKQLS AIDSEGNGKN 120 ADEGAIKNVK KRKPKKRQRD KVKLDEPSRL QRRARYLMIK MKLEQNLIDA YSGEGWKGKS 180 REKIRPEKEL LRARKQILKC KLGLREIIRL VDSLSTVGCI EDAVMAPDGS VSHEHIFCAK 240 CKLNEVSQDN DIVLCDGTCN CAFHQKCLDP PLDTENIPPG DQGWFCKFCD CRMEIIEAMN 300 AHLGTHFSED SGWQDIFKEE AAVPDGGNML LNPEEEWPSD DSEDDDYDPE RRENIMSGAG 360 TDDDASDDTS NSTRLSWSSD GEVFSGSRRW EVDGLDFRNN SIYSSLDSDE TSDGEIICGR 420 RQRRAVDYKK LYNEMFGKDA PAHEQPSEDE DWGPSKRKRR EKESDAASTL MTLYESKRRC 480 KNDATIEGMM KLPRDPQIRR PIFRLPPDAV EKLRQVFAEN ELPSRTVKEN LSKELGLEPG 540 KVSKWFKNSR YLALKSRKVE KGEQVHYSSS KVSAEPTLNV MKDKTADLSL LKDSQAETGV 600 CTPKNLKRIL QRKKPRSISK SLKINEQKRG SLESPPKSNE MNVEHNDDLS LKKLLKAKPK 660 GVKKKVNPIS AAAESDMEKL CRAKTRVENL KQKLVNLQAG KARKSSKIRP LDESVVYVPI 720 AELREKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | KNVKKRK |
2 | 456 | 461 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017661.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like | ||||
Swissprot | P48785 | 1e-156 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | B9IN73 | 0.0 | B9IN73_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s13920.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-152 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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