PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018129.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 365aa    MW: 41535.6 Da    PI: 7.8439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018129.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-5281371129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  k+ +  ++ewy F+++d+ky+tg+r+nrat++g+Wkatg+dk + + 
  CCG018129.1   8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcKIGSaPQNEWYLFCHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103
                  69****************************.99**************962433333556*************************************9. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  + +++g++ktLvfy grap+g+ktdW+mheyrle
  CCG018129.1 104 SYKKIGMRKTLVFYGGRAPHGQKTDWIMHEYRLE 137
                  8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-595159IPR003441NAC domain
PROSITE profilePS5100556.5068159IPR003441NAC domain
PfamPF023652.4E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCKIG  60
SAPQNEWYLF CHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYGGR  120
APHGQKTDWI MHEYRLEDGD DAQGNLGEDG WVVCRVFKKK NLFKVSGEGG TTSMNSSDQQ  180
LHSSSSNQSR TFMHRDSQYS LRQNHSHGNI QQPFVLSKAE LELHYPHMAA PHQYSLFQSQ  240
TLMPTNKSLG YDYSGLPKES PVMVKQLMSS SRDCESGSES LRYHACEPGL EVCTCEAPQQ  300
MVAGREDHQG LNEWAMLDRI VTSHLGNEDS AKGVRFDDAS NAPSAHAINQ LPLRGEMMDF  360
WGYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51816117167NO APICAL MERISTEM PROTEIN
1ut4_B3e-51816117167NO APICAL MERISTEM PROTEIN
1ut7_A3e-51816117167NO APICAL MERISTEM PROTEIN
1ut7_B3e-51816117167NO APICAL MERISTEM PROTEIN
3swm_A3e-51816120170NAC domain-containing protein 19
3swm_B3e-51816120170NAC domain-containing protein 19
3swm_C3e-51816120170NAC domain-containing protein 19
3swm_D3e-51816120170NAC domain-containing protein 19
3swp_A3e-51816120170NAC domain-containing protein 19
3swp_B3e-51816120170NAC domain-containing protein 19
3swp_C3e-51816120170NAC domain-containing protein 19
3swp_D3e-51816120170NAC domain-containing protein 19
4dul_A3e-51816117167NAC domain-containing protein 19
4dul_B3e-51816117167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999502.10.0PREDICTED: protein BEARSKIN1
SwissprotQ9SV871e-157BRN2_ARATH; Protein BEARSKIN2
TrEMBLB9N1Q00.0B9N1Q0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-150NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]