PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG018118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 176aa MW: 19274.6 Da PI: 6.7902 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.7 | 5.1e-31 | 14 | 94 | 5 | 82 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 ++ +++h+kv+gRdRR+Rl+++caar+F+L++eLG ++d++tieWLl+ a+p i++ tg + + + ++++++++ CCG018118.1 14 PKPRKDRHAKVNGRDRRIRLPVNCAARVFQLTQELGNKTDGETIEWLLRVAEPTIIAVTGKGIGTTNTIrgyAQAARVNTK 94 5788*********************************************************55555444332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.7E-28 | 17 | 103 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.579 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MNKASSSKTK VTDPKPRKDR HAKVNGRDRR IRLPVNCAAR VFQLTQELGN KTDGETIEWL 60 LRVAEPTIIA VTGKGIGTTN TIRGYAQAAR VNTKSVSYSD IHPSVSTGLL SPLTDPSEPR 120 SMEPIRTQGL ISTNCEVSAD EPLSFPSEFG NLETNFDMEF PVNGMFPSVS GNDHEE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999530.1 | 1e-129 | PREDICTED: transcription factor TCP22-like | ||||
TrEMBL | A0A2K1Z0T1 | 1e-114 | A0A2K1Z0T1_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 9e-29 | TCP family protein |