PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG018013.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 274aa MW: 27972.2 Da PI: 10.1454

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG018013.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.2e-38	42	127	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s CCG018013.1 42 AKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSI 127 79******************************************************************888444344433333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-33	47	134	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	47	101	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSDNSGAVNN GSLVDPQRNQ PPGGGGGGGG GGGGVTNGAL VAKKPPSKDR HSKVDGRGRR 60 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRA 120 GGNSNSISSL SSTNIHPVGS LEHKPLLGPA PFILGKRMRP EEDGNGGGKD DDGVSVGPTI 180 GSLMGPTATA GPGGFWALPA RPDFWGFAAA APPEMVVQPT AVQQSSLFMH QQHAAAMGEA 240 SAARVGNYLP GHLNLLASLS SGHGSSGRRE DDHR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239435	4e-42	AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBank	GQ496333	4e-42	GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBank	HG975440	4e-42	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	4e-42	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002260.1	0.0	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	2e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	B9H5Q1	1e-128	B9H5Q1_POPTR; TCP family protein
STRING	POPTR_0007s07480.1	1e-131	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-64	TCP family protein