PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017859.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 687aa MW: 77108.2 Da PI: 4.4513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017859.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	6.8e-14	467	512	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L CCG017859.1 467 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 512 7999********************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.0E-51	9	186	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.625	463	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-19	465	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.59E-15	467	517	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-19	467	531	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	467	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-17	469	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MAAPLSSRLQ TILQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVS 60 TEEASLQRSQ QLRDLYDSLS IGETNQPERR PCAALSPEDL TETEWFYLMC VSFSFSPGAG 120 LPGKAYDRKQ HVWLTGANDI DSKTFSRAIL AKTVVCIPLL DGVVEFGTTD KMKEDLGFIQ 180 HVKSFFSDHH HLPPPKPALS EHSTSNPATS SDHPYLYSPP IPPFLVAADP PANAGQMNED 240 EEEEEEEEEE EDDDEDDEED QESDLEAETS REALLEPCQA QNPLQVAVVE PSELMQLEMS 300 EGIRLGSPDD GSNTLDLDFP FISPESLMNH QSRADSFRTE SARRWAPMLQ DNPFSGSLQP 360 SASEDTHYSQ TVSTILQNQT IEHAAEASPN AYEAYSNQSA FTKWMNCTDP CLNVPVETTS 420 QWLLKYILFT VPYLHSKNRE ENSPKSRDGD AANKFRKGTP QDELSANHVL AERRRREKLN 480 ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLLQKIQDLE ARNKQMESEQ RSRSVDPPQT 540 MTTSTSLNEQ NNGVTVVDRA RSVGPGSDKR KMRIVEDYTT GRAQPKSVDS LPSPEPMVDA 600 EPEISVEVSI IESDALIELK CGYREGLLLD IMQMLRELRI ETIAVQSSSN NGIFVGELRA 660 KVKENVSGKK LSIVEVKRAI RQIIPLD

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MAAPLSSRLQ TILQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVS  60
TEEASLQRSQ QLRDLYDSLS IGETNQPERR PCAALSPEDL TETEWFYLMC VSFSFSPGAG  120
LPGKAYDRKQ HVWLTGANDI DSKTFSRAIL AKTVVCIPLL DGVVEFGTTD KMKEDLGFIQ  180
HVKSFFSDHH HLPPPKPALS EHSTSNPATS SDHPYLYSPP IPPFLVAADP PANAGQMNED  240
EEEEEEEEEE EDDDEDDEED QESDLEAETS REALLEPCQA QNPLQVAVVE PSELMQLEMS  300
EGIRLGSPDD GSNTLDLDFP FISPESLMNH QSRADSFRTE SARRWAPMLQ DNPFSGSLQP  360
SASEDTHYSQ TVSTILQNQT IEHAAEASPN AYEAYSNQSA FTKWMNCTDP CLNVPVETTS  420
QWLLKYILFT VPYLHSKNRE ENSPKSRDGD AANKFRKGTP QDELSANHVL AERRRREKLN  480
ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLLQKIQDLE ARNKQMESEQ RSRSVDPPQT  540
MTTSTSLNEQ NNGVTVVDRA RSVGPGSDKR KMRIVEDYTT GRAQPKSVDS LPSPEPMVDA  600
EPEISVEVSI IESDALIELK CGYREGLLLD IMQMLRELRI ETIAVQSSSN NGIFVGELRA  660
KVKENVSGKK LSIVEVKRAI RQIIPLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	1e-19	5	187	9	193	Transcription factor MYC3
4rqw_B	1e-19	5	187	9	193	Transcription factor MYC3
4rs9_A	1e-19	5	187	9	193	Transcription factor MYC3
4yz6_A	1e-19	5	187	9	193	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	476	ERRRRE
2	472	477	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269\|PubMed:20949001}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ909757	0.0	KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026186.1	0.0	PREDICTED: basic helix-loop-helix protein A-like
Swissprot	E3SXU4	0.0	BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBL	A0A2K2BDU7	0.0	A0A2K2BDU7_POPTR; Uncharacterized protein
STRING	POPTR_0002s05510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3637	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	8e-96	bHLH family protein

Publications ? help Back to Top
Hellens RP, et al. Identification of Mendel's white flower character. PLoS ONE, 2010. 5(10): p. e13230 [PMID:20949001]