PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017804.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 359aa    MW: 41229.5 Da    PI: 5.2345
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017804.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+ +++++sws+ g sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++ik
   CCG017804.1  46 FLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPHSFSSNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKQLLRNIK 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG017804.1 134 RRKA 137
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.71E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.7E-3942135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNPYLTVKQE YAGSSLLPLS SGDEPPTMML PPQPMEGLHD TGPPPFLTKT FDMVDDPMTN  60
HIVSWSRGGF SFVVWDPHSF SSNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLRGQKQLLR NIKRRKAASQ PLSQQQAPDA CVEVSRFGLD GEIDLLKRDR QVLMMELAKL  180
RQQQQKARSY IQAMEQRLQW TEQKQQQMMQ FLARAMQNPA FLLQLVQLKG KRKELEEAMT  240
KKRRIPVDQR PGRSGGGESN RIDESANPIK AEALEYGDYG FEVSELEALA LEMQGYGRTR  300
REQEDGVEVL EPLESGDREL DEGFWEELLN ESAGGGDDED VNTLAERLGY LRSSPKYRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-254413527129Heat shock factor protein 1
5d5v_B1e-254413527129Heat shock factor protein 1
5d5v_D1e-254413527129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139880.0KP013988.1 Populus simonii heat shock transcription factor A7a2 (HsfA7a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026101.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9GSI70.0B9GSI7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B