PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017735.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 228aa    MW: 25836.5 Da    PI: 5.0513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017735.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1993143255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  CCG017735.1  93 SYRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 143
                  69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-3093152IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2393153IPR016177DNA-binding domain
PfamPF008472.7E-1393143IPR001471AP2/ERF domain
SMARTSM003804.9E-3893157IPR001471AP2/ERF domain
PROSITE profilePS5103223.16993151IPR001471AP2/ERF domain
PRINTSPR003674.7E-1394105IPR001471AP2/ERF domain
CDDcd000181.72E-2094152No hitNo description
PRINTSPR003674.7E-13133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQSSLFYHDQ YLNSDFSPEC SFGSLHSFSW DELLFQSNSL PFNTNDSEEM ILFNALANGA  60
PKESSESNSS SGIKEEEVTS NAKEEEEAKR EKSYRGVRRR PWGKYAAEIR DSTRNGIRVW  120
LGTFDSAEAA ALAYDQAAFS MRGSTAVLNF PVEMVRESLQ DMNYRCEDGC SPVEALKRKH  180
SMRRKSKSRK TKVNQVPHSR PQNVVVLEDL GADYLEELLN SCDSSNSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-28941531574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025994.11e-170PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-78ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLB9H8L11e-137B9H8L1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24460.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-50ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]