PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017677.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 537aa    MW: 60633.2 Da    PI: 4.4061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017677.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.52.2e-441645373374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea + + +ela+++++rl+e+a p g++++Rla y+ +A +  +             ++++   s++  aa+k+f++++P+ +f+h+taN+
  CCG017677.1 164 HLLKAYGEAAEMEMKELAEKIMSRLKEMACPIGSTLERLAYYLIQAREGEVDF----------LWQEA---SKNYEAAFKAFYQIFPYGRFAHFTANS 248
                  788888899999999*******************************9999987..........34444...4566678999***************** PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   Ilea+ +e + vHi+Dfdi+qG+QWp+L+++La R  g+ ++R+T+++ +e++      s+++ eet+ rL + A+++g++++ + +   ++e l  
  CCG017677.1 249 VILEAIPEEaDIVHIVDFDIGQGVQWPPLIETLARR--GKRMVRLTAIKWEEEEdcigfgSSRRFEETKLRLYEHAQTFGLRLKVEEM---DMEGLVS 341
                  ******9987899**********************9..788********9888889******************************97...5666655 PP

         GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvks...lsPkv.......vvvveqe...adh.nsesFlerflealeyysalfdsl 271
                  e+ ++k+    gE la n+ + l ++   ++ ++    e+L+l k+   l+ +        +++++     +++ +++ +   f+  l  ++al +s+
  CCG017677.1 342 EMKKTKKrggrGEWLAFNCTVGLPHMG--KGRSARSLGEFLRLAKDsitLNTDCgsgtrgtITIADGIgwgMEMkEQKGYGSVFAGQLVQFMALIESM 437
                  55555555666***************8..44444447899999985333554422222222444443234466656669******************* PP

         GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrp 366
                  +  +p +  e+ri +E ++l + +++    +  +        +k +++l+e+G+ + ++++++  +a+ l+r+++ +   ++e  +++++vl  ++ p
  CCG017677.1 438 DCHFPDHLrEARIAMECVFLIPYVSSSFGLQMWD------DIAKESRALSEVGLVAWEMRKDNLLEARELIRETEsFYCVNIEgVKENQMVLSYMEVP 529
                  ****9988799*****************999999......4555579****************************6666777777899********** PP

         GRAS 367 LvsvSaWr 374
                  Lv vS+W+
  CCG017677.1 530 LVKVSSWT 537
                  *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.216136515IPR005202Transcription factor GRAS
PfamPF035147.6E-42164537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MVVEYLPCYS WQSTYNPIEE VGLFFRNTDQ LGSYPEDSSL CVSFEGFSDI SSPIPISPVS  60
LGFPPHVDDL PVPMSHPEEQ KYSLIPESNI TFDDPLMVRE FEDINDWLAS ENSGALQNFP  120
GDDAGSLLVS PPSMETSIDT LTTQTSLVLP GMGMEFDSQL MILHLLKAYG EAAEMEMKEL  180
AEKIMSRLKE MACPIGSTLE RLAYYLIQAR EGEVDFLWQE ASKNYEAAFK AFYQIFPYGR  240
FAHFTANSVI LEAIPEEADI VHIVDFDIGQ GVQWPPLIET LARRGKRMVR LTAIKWEEEE  300
DCIGFGSSRR FEETKLRLYE HAQTFGLRLK VEEMDMEGLV SEMKKTKKRG GRGEWLAFNC  360
TVGLPHMGKG RSARSLGEFL RLAKDSITLN TDCGSGTRGT ITIADGIGWG MEMKEQKGYG  420
SVFAGQLVQF MALIESMDCH FPDHLREARI AMECVFLIPY VSSSFGLQMW DDIAKESRAL  480
SEVGLVAWEM RKDNLLEARE LIRETESFYC VNIEGVKENQ MVLSYMEVPL VKVSSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-1517033927207Protein SCARECROW
5b3h_A3e-1517033926206Protein SCARECROW
5b3h_D3e-1517033926206Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103420.0AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005115.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A3N7GYN90.0A0A3N7GYN9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-18GRAS family protein