PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017674.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 464aa    MW: 52590.3 Da    PI: 4.5965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017674.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS145.26.5e-45914643374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea + + +ela+++++rl+e+a p g++++Rla y+ +A +  +             ++++   s++  aa+k+f++++P+ +f+h+taN+
  CCG017674.1  91 HLLKAYGEAAEMEMKELAEKIMSRLKEMACPIGSTLERLAYYLIQAREGEVDF----------LWQEA---SKNYEAAFKAFYQIFPYGRFAHFTANS 175
                  78888889999999********************************9999987..........34444...4566678999***************** PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   Ilea+ +e + vHi+Dfdi+qG+QWp+L+++La R  g+ ++R+T+++ +e++      s+++ eet+ rL + A+++g++++ + +   ++e l  
  CCG017674.1 176 VILEAIPEEaDIVHIVDFDIGQGVQWPPLIETLARR--GKRMVRLTAIKWEEEEdcigfgSSRRFEETKLRLYEHAQTFGLRLKVEEM---DMEGLVS 268
                  ******9987899**********************9..788********9888889******************************97...5666655 PP

         GRAS 192 eeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvks...lsPkv.......vvvveqe...adh.nsesFlerflealeyysalfdsl 271
                  e+ ++k+    gE la n+ + l ++   ++ ++    e+L+l k+   l+ +        +++++     +++ +++ +   f+  l  ++al +s+
  CCG017674.1 269 EMKKTKKrggrGEWLAFNCTVGLPHMG--KGRSARSLGEFLRLAKDsitLNTDCgsgtrgtITIADGIgwgMEMkEQKGYGSVFAGQLVQFMALIESM 364
                  55555555666***************8..44444447899999985333554422222222444443234466656669******************* PP

         GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrp 366
                  +  +p +  e+ri +E ++l++ +++    +  +        +k +++l+e+G+ + ++++++  +a+ l+r+++ +   ++e  +++++vl  ++ p
  CCG017674.1 365 DCHFPDHLrEARIAMECVFLRPYVSSSFGLQMWD------DIAKESRALSEVGLVAWEMRKDNLLEARELIRETEsFYCVNIEgVKENQMVLSYMEVP 456
                  ****9988799*****************999999......4555579****************************6666777777899********** PP

         GRAS 367 LvsvSaWr 374
                  Lv vS+W+
  CCG017674.1 457 LVKVSSWT 464
                  *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.81763442IPR005202Transcription factor GRAS
PfamPF035142.2E-4291464IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSHPEEQKYS LIPESNITFD DLLMVREIED INDWLASENS GALQNFPGDD VGSLLVSPPS  60
METSIDTLTT QTSLVLPGMG MEFDSQLMIL HLLKAYGEAA EMEMKELAEK IMSRLKEMAC  120
PIGSTLERLA YYLIQAREGE VDFLWQEASK NYEAAFKAFY QIFPYGRFAH FTANSVILEA  180
IPEEADIVHI VDFDIGQGVQ WPPLIETLAR RGKRMVRLTA IKWEEEEDCI GFGSSRRFEE  240
TKLRLYEHAQ TFGLRLKVEE MDMEGLVSEM KKTKKRGGRG EWLAFNCTVG LPHMGKGRSA  300
RSLGEFLRLA KDSITLNTDC GSGTRGTITI ADGIGWGMEM KEQKGYGSVF AGQLVQFMAL  360
IESMDCHFPD HLREARIAME CVFLRPYVSS SFGLQMWDDI AKESRALSEV GLVAWEMRKD  420
NLLEARELIR ETESFYCVNI EGVKENQMVL SYMEVPLVKV SSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-159726627207Protein SCARECROW
5b3h_A1e-159726626206Protein SCARECROW
5b3h_D1e-159726626206Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103420.0AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005102.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A3N7GYN90.0A0A3N7GYN9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-18GRAS family protein