PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 33883.9 Da PI: 10.0548 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.4 | 1.2e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ CCG017575.1 5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.771 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.16E-18 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 1.74E-17 | 117 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.7E-16 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.7E-16 | 119 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 24.993 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 3.3E-9 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMV 60 NGYGSREKPK LAPKRVHHVH RQDENLVSVG TVVQSDEDIP DAKPLPVSSA ALPVVNPKRT 120 TVRLDNLIME AITSLKEPGG SHKTAIASYI EEQYWPPNDF KRILSAKLKY LAANGKLIKV 180 KRKYRIAPTS AFAERRVSPL FFEGRQRISP KIERDDFNIL TMSQIDLDLG KMRTMTAEQA 240 AEVAARAVAE AEAAIAVAEE AAREAETAEA DAEAAQAFAE AAMKTLKGRT APKMVNFITG 300 SSLSDRF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU277754 | 1e-163 | GU277754.1 Populus balsamifera isolate FBK13 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277755 | 1e-163 | GU277755.1 Populus balsamifera isolate FBK13 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277756 | 1e-163 | GU277756.1 Populus balsamifera isolate FRE01 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277757 | 1e-163 | GU277757.1 Populus balsamifera isolate FRE01 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277758 | 1e-163 | GU277758.1 Populus balsamifera isolate GAL12 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277759 | 1e-163 | GU277759.1 Populus balsamifera isolate GAL12 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277760 | 1e-163 | GU277760.1 Populus balsamifera isolate HAY07 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277761 | 1e-163 | GU277761.1 Populus balsamifera isolate HAY07 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277762 | 1e-163 | GU277762.1 Populus balsamifera isolate INU03 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277763 | 1e-163 | GU277763.1 Populus balsamifera isolate INU03 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277764 | 1e-163 | GU277764.1 Populus balsamifera isolate KUU07 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277765 | 1e-163 | GU277765.1 Populus balsamifera isolate KUU07 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277766 | 1e-163 | GU277766.1 Populus balsamifera isolate MGR10 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277767 | 1e-163 | GU277767.1 Populus balsamifera isolate MGR10 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277768 | 1e-163 | GU277768.1 Populus balsamifera isolate NWL07 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277769 | 1e-163 | GU277769.1 Populus balsamifera isolate NWL07 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277770 | 1e-163 | GU277770.1 Populus balsamifera isolate STO11 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277771 | 1e-163 | GU277771.1 Populus balsamifera isolate STO11 haplotype B putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277772 | 1e-163 | GU277772.1 Populus balsamifera isolate WHR03 haplotype A putative DNA-binding protein gene, partial sequence. | |||
GenBank | GU277773 | 1e-163 | GU277773.1 Populus balsamifera isolate WHR03 haplotype B putative DNA-binding protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002157.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X3 | ||||
Refseq | XP_011002165.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like isoform X3 | ||||
Swissprot | Q8VWK4 | 7e-95 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A2K1Z526 | 1e-174 | A0A2K1Z526_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09020.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 9e-95 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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