PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22841 Da PI: 8.2142 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.5 | 1.8e-27 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C++dCvl++++ p++q++++ +v+k+FG++ ++++++++p+++ + +++sl++eA r+ +Pv+Gavg++++++++++q+++ CCG017552.1 2 SCNGCRILRKGCSEDCVLRQCIewinsPQAQANATVFVAKFFGRAGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVSGAVGLLRTGNWHVCQKAVM 99 6*********************************************************************************************9887 PP DUF260 94 lal 96 ++l CCG017552.1 100 TVL 102 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.144 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-24 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSCNGCRILR KGCSEDCVLR QCIEWINSPQ AQANATVFVA KFFGRAGLMS FISSVPKSQG 60 PSLFRSLLFE AVGRTVNPVS GAVGLLRTGN WHVCQKAVMT VLRRGTVEPQ PEPEGRVFGP 120 EFDNVSECDS FRPSADHVSS GSKTLKRKRD VDVAKRGPMR TDLDLSLMYQ RVDTPPEESE 180 TTTLESDSGN NCRFHDGGEP KLLRLFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001831.1 | 1e-152 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 7e-59 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | B9HMY4 | 1e-142 | B9HMY4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s09270.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-60 | LOB domain-containing protein 38 |