PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 370aa MW: 42345.9 Da PI: 8.3341 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.2e-18 | 269 | 359 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae++ +g++ ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD+++F+l ++++ l+v++fr CCG017395.1 269 VLRPSYLYRGCIMYLPSGFAEKNlNGVSG---FIILQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCIFELLKSRDVVLKVTLFR 359 78899******************876743...5999************666665..5699*********************998888889999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.065 | 1 | 87 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0032 | 2 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-15 | 7 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-14 | 10 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-10 | 10 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 258 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-25 | 260 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-23 | 264 | 359 | No hit | No description |
SMART | SM01019 | 9.4E-22 | 266 | 361 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.987 | 266 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-16 | 269 | 359 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MLCTIRKWDR IPDNFVKKFG HDISSFVRLI VPGGHVSRIG LIKADEKLWF HDGWQQFVER 60 FAIHIGYFLI FQYEGNAIFN VHIFNLPTSE INYHSNSLSG KRYLAFEELD NDENAENSGI 120 PPPQLIVNKS YNPPPLQNLF SGSKLNNCIN WSGEDTMRLT KGSSISQVAN ESARNVGAHY 180 NELYNSQDEV KLYSPDGETP KPKKRGRKRL KADPNEQQLS SPHDDDSEMR FRFYESASAR 240 KRTVTAEERE RAMNAAKAYA PDNPYCRVVL RPSYLYRGCI MYLPSGFAEK NLNGVSGFII 300 LQLPDGKQWP VRCLYRGGRA KFSQGWYEFT LENNLGEGDV CIFELLKSRD VVLKVTLFRV 360 LEDGGLMNHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-73 | 232 | 362 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-73 | 232 | 362 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 211 | GRKRLKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999692.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 1e-128 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | U5G3W5 | 0.0 | U5G3W5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s11170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-124 | B3 family protein |
Publications ? help Back to Top | |||
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