PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017393.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 138aa    MW: 16067.5 Da    PI: 7.452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017393.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.1e-14998197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 ffk+ +p      + l+lpk+f++++g+  e s   ++  ++g  We+ l  +k  + +++ +GWk+Fv+ + +  +  +vF++ g s+f  +v++f
  CCG017393.1  9 FFKIVLPRTLE-DQKLRLPKRFVRKFGE--ELSDVASVVVPTGHAWEIGL--TKAENCIWFDDGWKKFVEHHCIVFKYLLVFRYRGLSNF--NVTIF 98
                 66766555555.556***********94..5888999*************..999999*************************9887998..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-204108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-196102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-14798No hitNo description
PROSITE profilePS5086311.118101IPR003340B3 DNA binding domain
PfamPF023624.3E-11997IPR003340B3 DNA binding domain
SMARTSM010194.0E-109101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAETPLWHFF KIVLPRTLED QKLRLPKRFV RKFGEELSDV ASVVVPTGHA WEIGLTKAEN  60
CIWFDDGWKK FVEHHCIVFK YLLVFRYRGL SNFNVTIFIM KACEIQYPSS KPASGEEIDY  120
GQNFSSVRNG QMGDDDCR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315168.27e-48B3 domain-containing transcription factor VRN1
RefseqXP_011035988.17e-48PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_011035989.17e-48PREDICTED: B3 domain-containing transcription factor VRN1-like
RefseqXP_024465036.17e-48B3 domain-containing transcription factor VRN1
TrEMBLA0A2K1YWN81e-46A0A2K1YWN8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15430.12e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-31B3 family protein