PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017318.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 144aa    MW: 16109.3 Da    PI: 10.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017318.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081258144
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     r +WT+ E +l+ +a +++ ++   +W  Ia+ +g  ++++++k ++
      CCG017318.1 12 RSAWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKKHY 58
                     789********************************668********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-4862IPR009057Homeodomain-like
PROSITE profilePS5129310.0821066IPR017884SANT domain
SMARTSM007177.4E-91164IPR001005SANT/Myb domain
PfamPF002496.2E-71258IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-111370IPR009057Homeodomain-like
CDDcd001677.78E-71458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSSYQASRN SRSAWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKKHYEI  60
LIEDLHHIES GRIPIPKYKS SGSRNNTNKE ERVGPCAKSE NGNFSSKGAS EASQPAVKSK  120
TRTGYLFIIL KASLWKVDAP IIMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29789384RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048394.11e-62PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1735e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K1Z6H22e-58A0A2K1Z6H2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s11990.11e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-31RAD-like 6