PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 29673.5 Da PI: 4.4293 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 249 | 272 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++ F + Lk+H + H CCG017055.1 249 FSCKSCDRAFGTDGALKSHSQAkH 272 89*****************76655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 6.2E-8 | 6 | 163 | No hit | No description |
PROSITE profile | PS50157 | 10.616 | 249 | 275 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 251 | 272 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSSMEFWGVE VKAGEPLKVE PKDFCMIHLS QAALGESKKG NESVPLFVKF DEKKLVLGTL 60 SPENIPQLSF DLVFEKEFEL SHNWKNGSVF FCGYQVIPDD DASDFSGDEE DFEFAKADIM 120 KAATAKDKAA KPEKPKATLV EPSIDDDEDD SDEDDSDEDG DSEEGMSLDE DSDDESDSED 180 EETPKKAETS KKRANDSATK TPVSSKKAKT ATPQKTDGKK AGQVTPHPAK GKAAANGNSS 240 KSPKSGGNFS CKSCDRAFGT DGALKSHSQA KHGAK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144730 | 0.0 | EF144730.1 Populus trichocarpa clone WS01117_I04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044413.1 | 0.0 | PREDICTED: histone deacetylase HDT1-like | ||||
Swissprot | Q6V9I6 | 3e-64 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A9P996 | 0.0 | A9P996_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s15160.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 1e-35 | histone deacetylase 3 |
Publications ? help Back to Top | |||
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