PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG016947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 76215.5 Da PI: 4.6286 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 191.6 | 5e-59 | 6 | 367 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + Ll+ A+a+++gdl+la+++ ++++ l +++ +++++l+ +++eAL +rl++ ly p+ ++ s+++ + P++ f+ CCG016947.1 6 LNKLLDSAKAIEDGDLNLAETVFKEIKLLnDANTSTATRKLVRFYAEALIRRLYK----LYPRNPTPLAP---STDSY--YIRCWRFLPFVWFAEKSS 94 5789*************************5555669*******************....55433333333...33332..22356789********** PP GRAS 99 NqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeL 194 + Il+av g+++vH+i f+ ++ + L++ L + ++ s+++T + ++ s+++e l+e+ + La A++l++ +f+ + + a++ + + ++L CCG016947.1 95 HHSILDAVVGKKKVHVINFSnMEFNMMIRDLMRDLVRQVGSGLSFQVTNIRPKLSNNEEYLQEMDRVLAAEAKTLRLtDFKSDHVFANTAAGIVESTL 192 *******************8356689999*******9999999*********9999********************946***9999999999989999 PP GRAS 195 rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEre 288 ++k+ +Ea++V++ l+lh+l +++le+ vL+ +k+l+P+++v+veqea+hns++ l+r+++++ yys++fds+e+ + + e++i+ E CCG016947.1 193 NLKRtseDEAIVVKWELELHKLILVPGALEK----VLSKLKELRPEIMVIVEQEANHNSPDILDRLAQSFPYYSSVFDSIEKDTTEYDlENKISWEMD 286 8888888****************99999999....*********************************************988888885666666666 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r+i+nvva e ++ erhet + Wr++l+++GF+pv+ + l + y++e ++g+ +l + pLv +SaW+ CCG016947.1 287 -FRRQITNVVAREDIQHAERHETQAWWRDQLRRSGFHPVRQWFNHIR--GFLFSDLT--QYTIEGKNGCPFLRRYTVPLVITSAWK 367 .*************************************985544443..33445444..5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.51 | 1 | 351 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-56 | 6 | 367 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MATLLLNKLL DSAKAIEDGD LNLAETVFKE IKLLNDANTS TATRKLVRFY AEALIRRLYK 60 LYPRNPTPLA PSTDSYYIRC WRFLPFVWFA EKSSHHSILD AVVGKKKVHV INFSNMEFNM 120 MIRDLMRDLV RQVGSGLSFQ VTNIRPKLSN NEEYLQEMDR VLAAEAKTLR LTDFKSDHVF 180 ANTAAGIVES TLNLKRTSED EAIVVKWELE LHKLILVPGA LEKVLSKLKE LRPEIMVIVE 240 QEANHNSPDI LDRLAQSFPY YSSVFDSIEK DTTEYDLENK ISWEMDFRRQ ITNVVAREDI 300 QHAERHETQA WWRDQLRRSG FHPVRQWFNH IRGFLFSDLT QYTIEGKNGC PFLRRYTVPL 360 VITSAWKPEL AQSDGGSDNK ENVGSPESML LGLEFNDLSI IQNECEEEGD PTIMREGNVW 420 SSECLSMNEI AASAEIFDIL EYVCHVYKLP LALTWISDGR DPAKNYEGKN VLRVEDTACY 480 VNDLGATEFV EICAEFDIEE GQGVAGKALL SDIYFVPDVS ELDPADYPFV YEAWEFGLHG 540 AVAIKLRSTC RSSMDYILEF FLPSKMREIS EKQLLVNKIL SALQKSCRNS WIVCGMDLNV 600 VDVVSEVTAA EMSDITLMPN SGNSPSASNA DGSNPNNIMG WNMLSPVGDL VEIYETDEKV 660 HFLTSNLSYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-14 | 13 | 368 | 26 | 379 | Protein SCARECROW |
5b3h_D | 5e-14 | 13 | 368 | 26 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015945.1 | 0.0 | PREDICTED: DELLA protein GAIP-B-like | ||||
TrEMBL | A0A2K1ZTT2 | 0.0 | A0A2K1ZTT2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17902 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 4e-65 | GRAS family protein |