PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016852.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 758aa    MW: 82794.9 Da    PI: 5.6446
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016852.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2091146156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  CCG016852.1  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                  688999***********************************************999 PP
2START217.54.6e-682805001206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+ +ep+W++s       +++de++++f+++ +     ++ ea+r+s+vv+m++ +lve l+d++ qW+  +     +a tlev+
  CCG016852.1 280 ELAVAAMEELVRMAQMDEPLWMSSLdgtnAVLDEDEYVRIFPRGIGpkptgFKCEASRESAVVIMNHINLVEYLMDVN-QWSILFSgivsRALTLEVL 376
                  57899********************99888899**********999********************************.99999999999******** PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p     +R++++pSg+li+++ ng+skvtwvehv++++r 
  CCG016852.1 377 STGvagnynGALQVMTAEFQLPTPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPSPA----ARCRRRPSGCLIQEMLNGYSKVTWVEHVEVDDRG 470
                  *********************************************************995....********************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+gak+wvatl+rqce+
  CCG016852.1 471 VHNLYKQLVSSGHAFGAKRWVATLDRQCER 500
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2270146IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1978148IPR009057Homeodomain-like
PROSITE profilePS5007116.95788148IPR001356Homeobox domain
SMARTSM003894.8E-2089152IPR001356Homeobox domain
PfamPF000464.3E-1891146IPR001356Homeobox domain
CDDcd000862.68E-1991149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PROSITE profilePS5084844.108271503IPR002913START domain
SuperFamilySSF559613.3E-34272502No hitNo description
CDDcd088757.52E-129275499No hitNo description
SMARTSM002341.3E-65280500IPR002913START domain
PfamPF018521.8E-57281500IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-4380481IPR023393START-like domain
SuperFamilySSF559614.0E-23519750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPAGMMIPAR NMPSMIGVNG NAGGFGSSSG LALGQPNMME GQLHRLDMTQ NTPEGDMARI  60
RDDEFDSTNT KSGSENQDGA SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALSNASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVVNYPL ISAPMPPRPL  240
DLGVGNFGGQ PGIGGEIYGA GDLLRSITAP TESDKPMIIE LAVAAMEELV RMAQMDEPLW  300
MSSLDGTNAV LDEDEYVRIF PRGIGPKPTG FKCEASRESA VVIMNHINLV EYLMDVNQWS  360
ILFSGIVSRA LTLEVLSTGV AGNYNGALQV MTAEFQLPTP LVPTRESYFV RYCKQHADGT  420
WAVVDVSLDN LRPSPAARCR RRPSGCLIQE MLNGYSKVTW VEHVEVDDRG VHNLYKQLVS  480
SGHAFGAKRW VATLDRQCER LASAMATNIP AGDVGVITNQ EGRKSMMKLA ERMVISFCAG  540
VSASTAHTWT TLSGTGADDV RVMTRKSVDD PGRPPGIVLS AATSFWLPVP PKRVFDFLRD  600
ESTRNEWDIL SNGGVVQEMA HIANGRDTGN CVSLLRVNSA NSSQSNMLIL QESCTDQTAS  660
FVIYAPVDIV AMNVVLNGGD PDYVALLPSG FAVLPDGTAA HGGGMEEASG GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNN LIACTVERIK ASLSCESA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005113.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLB9IAE60.0B9IAE6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2