PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016823.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 543aa MW: 62357.3 Da PI: 4.7111

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016823.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	94.7	1.4e-29	159	542	7	374
GRAS 7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 + ea++++++ela+ + r+s+ + p+g+ +Rl y + + ++ e+ ++ al++f++++P +sh+taN+ Ile CCG016823.1 159 AYKEAMENKEAELAEVIARRISKKVGPTGEIEERLLYYSFQPVDKETDY-------LMQ--ES----AKNFDRALEAFYKIFPQGMISHFTANSVILE 243 4457888889999999999999999999999999999998887776665.......122..22....3345567788********************* PP GRAS 105 avege.ervHiiDfdisqGlQWpaLlqaLasRpeg............ppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlva 183 a ++ e +HiiDfd+++G+QW +++ aL ++++ +l+iT+++ +++g s ++ eet++rL++ + +g+ +e + + CCG016823.1 244 AKPRDaEVLHIIDFDMGEGMQWSSMIMALGRKQKElqaqqyyghiphYTTLKITAIKWKDEGsghhapSWRKFEETKRRLHDCENPFGLILEVEGVEL 341 99994666******************99966666778888754559***98888999999999********************955 PP GRAS 184 k.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.................sFlerflealey 263 + +++ ++ +++E l n++ +l ++ +++ + + +++++ k++ + v + n++ F f +++e+ CCG016823.1 342 QdWARKIKGKRKGGERREWLSFNCMWALSQMGRKRS--RRHVVDFVRTAKEILTSISVYSYTS---NGGiltfgdggawelfkdcpGFGFFFDNCMEH 434 5144567777778888***********83332..3335677777777766666654433...22222334557788888888899999** PP GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgs 357 y al++s+e k p+ e+ri +E ++++ +++ ++ e re++ ++ + +G++ ++ls++ +ak ++r+ ++ y v ++ ++ CCG016823.1 435 YQALLESIEWKPPSCFiEARIAMECLFVAPYASSRAWIQEWEEREQCCDFK------TGFGLEGLRLSNESLLEAKEMVREGEVP-YAVRiegDNYNE 525 *******655559*****9999999888888887555555444......5789999**************955.555543666899 PP GRAS 358 lvlgWkdrpLvsvSaWr 374 +vl ++ +L+ +SaW+ CCG016823.1 526 MVLEFRGTQLIKISAWK 542 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.732	127	520	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-27	159	542	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MRDSEFFQLP GPQCYSNNIQ EHDYSYFEPY MDANIHHFEL SPDPLTTTGS TSNESVDFPV 60 DSDSMNIDEY SPLDFEEFVL IWRDQNGFSK GLEESCSFQP YSSEGELTEK CSPSLSTISS 120 AGAISISTMD ASLIQQPLTS PTGDMEIDNQ LSVHHLVKAY KEAMENKEAE LAEVIARRIS 180 KKVGPTGEIE ERLLYYSFQP VDKETDYLMQ ESAKNFDRAL EAFYKIFPQG MISHFTANSV 240 ILEAKPRDAE VLHIIDFDMG EGMQWSSMIM ALGRKQKELQ AQQYYGHIPH YTTLKITAIK 300 WKDEGSGHHA PSWRKFEETK RRLHDCENPF GLILEVEGVE LQDWARKIKG KRKGGERREW 360 LSFNCMWALS QMGRKRSRRH VVDFVRTAKE ILTSISVYSY TSNGGILTFG DGGAWELFKD 420 CPGFGFFFDN CMEHYQALLE SIEWKPPSCF IEARIAMECL FVAPYASSRA WIQEWEEREQ 480 CCDFKTGFGL EGLRLSNESL LEAKEMVREG EVPYAVRIEG DNYNEMVLEF RGTQLIKISA 540 WKL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MRDSEFFQLP GPQCYSNNIQ EHDYSYFEPY MDANIHHFEL SPDPLTTTGS TSNESVDFPV  60
DSDSMNIDEY SPLDFEEFVL IWRDQNGFSK GLEESCSFQP YSSEGELTEK CSPSLSTISS  120
AGAISISTMD ASLIQQPLTS PTGDMEIDNQ LSVHHLVKAY KEAMENKEAE LAEVIARRIS  180
KKVGPTGEIE ERLLYYSFQP VDKETDYLMQ ESAKNFDRAL EAFYKIFPQG MISHFTANSV  240
ILEAKPRDAE VLHIIDFDMG EGMQWSSMIM ALGRKQKELQ AQQYYGHIPH YTTLKITAIK  300
WKDEGSGHHA PSWRKFEETK RRLHDCENPF GLILEVEGVE LQDWARKIKG KRKGGERREW  360
LSFNCMWALS QMGRKRSRRH VVDFVRTAKE ILTSISVYSY TSNGGILTFG DGGAWELFKD  420
CPGFGFFFDN CMEHYQALLE SIEWKPPSCF IEARIAMECL FVAPYASSRA WIQEWEEREQ  480
CCDFKTGFGL EGLRLSNESL LEAKEMVREG EVPYAVRIEG DNYNEMVLEF RGTQLIKISA  540
WKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216544	0.0	AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015890.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2K1XEQ8	0.0	A0A2K1XEQ8_POPTR; Uncharacterized protein (Fragment)
STRING	POPTR_0016s13120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4274	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	2e-12	GRAS family protein