PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016618.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 304aa    MW: 33902.2 Da    PI: 7.3105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016618.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001127149123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  CCG016618.1 127 YECKTCSRTFPSFQALGGHRASH 149
                  99**********99999998887 PP
2zf-C2H212.60.00041204226123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ Cg  F++   L  H+r+H
  CCG016618.1 204 HECSVCGAEFTSGQALGGHMRRH 226
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-13126151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-7126149No hitNo description
SMARTSM003550.11127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576671.55E-7199226No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4202228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.284204228IPR007087Zinc finger, C2H2
SMARTSM003550.012204226IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-13204228IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEASEEVTTR VAKGKRTKRL RVQSAIPFGL STDSSSGDGG TNWSPTTSID EFQDSTEEEE  60
DMANCLILLA KGHSRDFPKQ QHHHHQDHDH DHDHDSRGGV YTAKFNSRKF LETANSTGSG  120
RVGYYVYECK TCSRTFPSFQ ALGGHRASHK KPKAIHNDEK KQNLSISSDE EDGHYKNVSS  180
LSLQLSENNT NRGTYSNHNK GKIHECSVCG AEFTSGQALG GHMRRHRGPL VSSTTTLSLT  240
PMTIESEEPK RARNVLSLDL DLNLPAPEDD KFVFASKQQQ KQQQQKQQNT SLVFTSPALV  300
DCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031622.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2K1ZAW80.0A0A2K1ZAW8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23610.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-65C2H2 family protein