PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016576.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 21993.3 Da    PI: 7.7023
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016576.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-251058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 rien+  rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gklye +
  CCG016576.1 10 RIENHVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 58
                 8*********************************************965 PP
2K-box46.12.2e-16941701792
        K-box  17 lqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                   ++e++ Lk+eie Lq+ +R + G     ++sl eL  Le++Le+ + +iRs+K+e+l++  ++l +k +e+ e+++
  CCG016576.1  94 TKEEINMLKQEIEVLQKGLRYMFGARaAAEMSLDELLVLEKHLENWIYQIRSTKEEILTAANQHLHNKVEENAEITN 170
                  579*********************862579****************************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-27174IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.04E-38278No hitNo description
PRINTSPR004041.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.37691180IPR002487Transcription factor, K-box
PfamPF014867.2E-1594167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MARGKVQLRR IENHVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYELATK  60
GTMQGLIEKY MKSSRGAQPE PAALETQPAP DLDTKEEINM LKQEIEVLQK GLRYMFGARA  120
AAEMSLDELL VLEKHLENWI YQIRSTKEEI LTAANQHLHN KVEENAEITN FVSVTTDFPH  180
PLTTQNEIRF QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15196192MEF2C
5f28_B1e-15196192MEF2C
5f28_C1e-15196192MEF2C
5f28_D1e-15196192MEF2C
6byy_A1e-15196192MEF2 CHIMERA
6byy_B1e-15196192MEF2 CHIMERA
6byy_C1e-15196192MEF2 CHIMERA
6byy_D1e-15196192MEF2 CHIMERA
6bz1_A1e-15174173MEF2 CHIMERA
6bz1_B1e-15174173MEF2 CHIMERA
6bz1_C1e-15174173MEF2 CHIMERA
6bz1_D1e-15174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031550.11e-138PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388414e-66AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2K1WR831e-131A0A2K1WR83_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10540.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-68AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]