PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG016506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13662.2 Da PI: 11.2342 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.3e-17 | 5 | 94 | 2 | 90 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 k+l + +++rl++p +f+++ g +t +de+g+ W+++++ rk+++ vlt+GW Fvk+++L++gD v+F ++++++ CCG016506.1 5 SKIL--RETDTKKRLSVPIRFLRSLppfklG---SHAVTFDATDEKGKAWTFQCSTRKRGQYpkPVLTRGWVAFVKSKKLQVGDKVMFI-KRENCA 94 5666..55667778*********99998532...256799999***********87777776889***********************8.222444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.911 | 2 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.5E-8 | 4 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.09E-19 | 4 | 87 | No hit | No description |
Pfam | PF02362 | 3.2E-14 | 6 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAVFSKILRE TDTKKRLSVP IRFLRSLPPF KLGSHAVTFD ATDEKGKAWT FQCSTRKRGQ 60 YPKPVLTRGW VAFVKSKKLQ VGDKVMFIKR ENCATATISY KVRAEKAIKI FGATFGYARI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-146 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003894.1 | 1e-83 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9IDU9 | 2e-68 | B9IDU9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01840.1 | 2e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34390.1 | 1e-10 | auxin response factor 22 |