PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016420.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 129aa MW: 15131.5 Da PI: 7.234

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016420.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.8	2.6e-10	7	108	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f k+l + ++ s+ l++p + + ++ +g ++ d + ++W++ l+ +++ ++l++ W +Fv+++gL D vvF ++g+ + + CCG016420.1 7 FTKKL--KPTHISHTLSFPTHVL-QYftftEGA--HMMKFEAVDATDNEWTFCLSTrltGAYPKPVLLRSSWHRFVEQKGLAPEDRVVFFMEGDdMVR 99 66777..3333445599998888.565765433..456677779999*****77555555555**********************999998999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++v++ rk CCG016420.1 100 RYTVRAQRK 108 999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-11	3	97	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-12	4	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.64E-8	5	98	No hit	No description
Pfam	PF02362	2.6E-7	7	108	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEPVHLFTKK LKPTHISHTL SFPTHVLQYF TFTEGAHMMK FEAVDATDNE WTFCLSTRLT 60 GAYPKPVLLR SSWHRFVEQK GLAPEDRVVF FMEGDDMVRR YTVRAQRKVM ILMGQDVWVD 120 VEDLPLYGH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213926	1e-171	AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBank	AC214100	1e-171	AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007876.1	2e-93	PREDICTED: uncharacterized protein LOC105113412
Refseq	XP_011015795.1	2e-93	PREDICTED: uncharacterized protein LOC105119365
TrEMBL	A0A3N7EU91	1e-86	A0A3N7EU91_POPTR; Uncharacterized protein
STRING	cassava4.1_027512m	1e-45	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13907	2	9