PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015961.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 453aa    MW: 52231.3 Da    PI: 4.8947
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015961.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.42.1e-0948125182
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                  +Wt ++ l L++    ++++++++ +  ++W+ +  ++ +  ++ +  qC++kw++l  +y +ik+++k+ +s+s     ++
  CCG015961.1  48 EWTAKQALILVNEIAAVDKDSSKAVSTNQKWKIIVGNCVALDVTHTLSQCRSKWNSLVIEYNQIKKWDKESESRSD----FY 125
                  5********************************************************************9644443....34 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-747128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MADIEMEATQ STTAINNKKR KKGNQDCKNS NSSRVLSTPR TRSQVSPEWT AKQALILVNE  60
IAAVDKDSSK AVSTNQKWKI IVGNCVALDV THTLSQCRSK WNSLVIEYNQ IKKWDKESES  120
RSDFYWSLGC ERRKEFGLPE NFDDELFKAI DDYMWSQKEQ LDTDPDNDLQ KADLLDVIAN  180
LGAKKQRKWL TSLKTHTEEK THKCCRKENS QTIHAEEEPQ KRHEEENSQI YCTMESPHGF  240
HAEEECQESQ VQENTQTCCS EGKLQTIHAD DYPWERCAEE EPHTIHAEEW LQPCCSKEKP  300
QTIHVQEENQ ERYVEENHQT CCTKEKPQTI PAEEELHEIQ VKEKPQKPLR KEKPQIGSGD  360
EKPKIYSGRK KMPSTEDMEQ LMVEKLSENA EMIQAVVNGN LPEMADVEAA DSNNIEGFKT  420
DLIRSQGDKL IACLENIVNT MRQFPWLLQD ATT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11721KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002961.10.0PREDICTED: uncharacterized protein LOC105109831 isoform X1
TrEMBLA0A3N7G5K70.0A0A3N7G5K7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s29340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.13e-43sequence-specific DNA binding transcription factors