PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015907.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 598aa    MW: 67753.7 Da    PI: 7.9364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015907.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13424468554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + Er+RR++iN++f  Lr++lP+       K +Ka+iL+++ eY+ sL
  CCG015907.1 424 HMISERKRREKINESFKALRSILPPE-----AKKDKASILTRTREYLTSL 468
                  8899*********************6.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17417485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-13419473No hitNo description
Gene3DG3DSA:4.10.280.105.4E-17422488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10424468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDAVFLLSEV ERDNFLRYFM QCFGSTYICL WSYLPQPSNY LLFWDGYYHE ESNQPSSSSG  60
SVARMLFDQY RQGRFFAVND RVPGVAFKNK IPCIELKEFE LQRSASADAQ RRFYQEARIK  120
TAVFMGCDSG EIELGWSNAT HQFNIENEMR KWFPEDFSRQ SPLRELPLVV DPNKPSSSSS  180
SLRSLSMDSP EISSLIFTIP SSSHIPEAHR EAPSLLPPIL PSTSSPLQHT LQLLQPVLPT  240
PTGNILQQVL QSLQQKPSPQ QLAIQSSQST PSTTSLLQEA MQPLQAIQSC TSPHQQDMQP  300
LQAIQSSTSP HQQAMQAFAL ERNIQLPTPE SEDAVMTRAI LAVLTFPSPS SSSSSHSLPH  360
MHRVCQGASA FKNYRSALAP STQTRASLHR QTMLKRVVTY YRRLNIERRE HMLGGRPTST  420
QLHHMISERK RREKINESFK ALRSILPPEA KKDKASILTR TREYLTSLKA QVEELSRQNQ  480
KLEAQLSKAA VAQVRDSSNE RLDVRVTHIS ESTSEQRIID LVVNLRGESP ILDTVITRIL  540
EFLRQFTDVS LISIEASTHT AESASFNRVI LRLNIEGIEW DESGFQEAVR RVVEDLAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427432ERKRRE
2428433RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004714.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A3N7FZ360.0A0A3N7FZ36_POPTR; Uncharacterized protein
STRINGPOPTR_0006s15310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-59bHLH family protein