PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015867.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 363aa    MW: 41061.2 Da    PI: 6.5101
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015867.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.13.2e-32115217199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k ltpsdv+k++rlv+pk++ae++    g +  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD v+F+++++++ +l++
  CCG015867.1 115 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsGDSVDKGLLLSFEDESGKYWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDAVLFERHRTDGDRLFI 212
                  99***************************966667889*************************************************98889999*** PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  +++r+
  CCG015867.1 213 GWRRR 217
                  ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-43110228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-31111220IPR015300DNA-binding pseudobarrel domain
CDDcd100176.15E-28113207No hitNo description
PROSITE profilePS5086314.184115218IPR003340B3 DNA binding domain
PfamPF023621.8E-29115217IPR003340B3 DNA binding domain
SMARTSM010192.4E-25115218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSINHFSTDL QQTLSWWAQQ PQSIMEPNPS TSSSKPNKPP NSSWPPHLHH LDHHHSWLNH  60
FSPQEPSSMF PPQNPNLSFN LNEEDDEEED HEQQQDEAQR EHEQEGLVLD KEPMFEKPLT  120
PSDVGKLNRL VIPKQHAEKY FPLSGDSVDK GLLLSFEDES GKYWRFRYSY WNSSQSYVLT  180
KGWSRYVKEK QLDAGDAVLF ERHRTDGDRL FIGWRRRGEM SSSSSANNSG VMVQGSSGGM  240
WRRGLYSSPS SSGPYHLSGS NMQHGHGANV SATTVPFQSD CLHAVPAAQN LRAQPGNSRR  300
LRLFGVNLEC QLDEAEPSTP DGSSLSSLQG PVHQQFYSQP AYSSNSTHSQ LIIYIIKKGM  360
RDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-491102173113B3 domain-containing transcription factor NGA1
5os9_B4e-491102173113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004667.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI32e-70Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3N7G2N70.0A0A3N7G2N7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s22460.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-71B3 family protein