PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015858.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 671aa MW: 74229.6 Da PI: 9.3729

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015858.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	617	640	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f C+ G+ C+F H+ CCG015858.1 617 QKPCMYFKTPKGCRNGSDCPFQHD 640 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.31	614	642	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
MGRQTCGPEE RSADQHAPAT TMEADGEKET REELWGAILE LYEKLPQRIK NQLTLEKFDV 60 HRDVSRDFQV YSSSRRSEGS TVGKLSRKLE RFKNQLNLEK FDVHRDVSRD LKVDSSSRLA 120 LIYRLIRLKK VRLFLSEDCP SEVGGQVQDL LQKNASRLLP ISSRKDSNDL PPGFEGTHFL 180 NPYIKELSCI PRVQWKCPPN FVVNYNWRVT DGEESQESEA QKLREMRILE AVYPRPSSVP 240 PSPAVSLDVE EENYDDSLTP IIPLIPVEEE EAAEMPAALT EPLKNPTTSL SPALPPVLLS 300 SGILNSSKSN TPALNPPASQ KPELGRLPDP GTHPITAASA AVTAIIKSKE QGGLIDTDLL 360 AKIFSDPKMV DKLISGSQTL PVTSRPVSSS RSPLYAKPAM VSAPSPANGN LQHLPSKELP 420 WSKPMGQIPI PCPKPAVHFP SMPYDGSLHH QLSQVQTTVT RTSMLQDAVP ATGLGVASPI 480 PVPIQEPGKV SAPRPPVGNL FSASNSMQTT PSLVPAESKT PQISYFKDIH PNPMFDSVKP 540 TLVKKPKQPI SVPQGGKKTN LVKDVSYIKN LIKEHGTAKK EMKDRNLFHN GSHYYNHTQN 600 PESIQNSKNR ELKPKFQKPC MYFKTPKGCR NGSDCPFQHD MSFQFQTGSS DSKLQVAKRM 660 KFSGEITAGR T

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

MGRQTCGPEE RSADQHAPAT TMEADGEKET REELWGAILE LYEKLPQRIK NQLTLEKFDV  60
HRDVSRDFQV YSSSRRSEGS TVGKLSRKLE RFKNQLNLEK FDVHRDVSRD LKVDSSSRLA  120
LIYRLIRLKK VRLFLSEDCP SEVGGQVQDL LQKNASRLLP ISSRKDSNDL PPGFEGTHFL  180
NPYIKELSCI PRVQWKCPPN FVVNYNWRVT DGEESQESEA QKLREMRILE AVYPRPSSVP  240
PSPAVSLDVE EENYDDSLTP IIPLIPVEEE EAAEMPAALT EPLKNPTTSL SPALPPVLLS  300
SGILNSSKSN TPALNPPASQ KPELGRLPDP GTHPITAASA AVTAIIKSKE QGGLIDTDLL  360
AKIFSDPKMV DKLISGSQTL PVTSRPVSSS RSPLYAKPAM VSAPSPANGN LQHLPSKELP  420
WSKPMGQIPI PCPKPAVHFP SMPYDGSLHH QLSQVQTTVT RTSMLQDAVP ATGLGVASPI  480
PVPIQEPGKV SAPRPPVGNL FSASNSMQTT PSLVPAESKT PQISYFKDIH PNPMFDSVKP  540
TLVKKPKQPI SVPQGGKKTN LVKDVSYIKN LIKEHGTAKK EMKDRNLFHN GSHYYNHTQN  600
PESIQNSKNR ELKPKFQKPC MYFKTPKGCR NGSDCPFQHD MSFQFQTGSS DSKLQVAKRM  660
KFSGEITAGR T

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214417	0.0	AC214417.1 Populus trichocarpa clone POP037-E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013672.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6-like
TrEMBL	B9HFK4	0.0	B9HFK4_POPTR; Uncharacterized protein
STRING	POPTR_0007s13990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9