PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015493.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 233aa    MW: 25403.7 Da    PI: 6.4114
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015493.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-38411421101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+++
  CCG015493.1  41 PCGACKFLRRKCINGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLRIPLNRRHEAIVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSMV 138
                  7***********************9989*********************************************************************9 PP

       DUF260  98 keel 101
                  +++l
  CCG015493.1 139 QTQL 142
                  9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.95140142IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3841139IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTEPLGDAMS ETRRKGIGKC AATMSDESQP VSELAPTPAS PCGACKFLRR KCINGCIFAP  60
HFGSDQGAAR FAAVHKVFGA SNVSKLLLRI PLNRRHEAIV TISYEAQARL SDPVYGCVST  120
ILALQQQVAS LQAELSMVQT QLINSRFAMA NALQQQHHVA MLQPAYSNNS SASTNYINMS  180
SFTSNFDLVT DTAPSSHSME PLHISQPSHD EEEDEEESQL PGVIFANEVL HRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37361486115LOB family transfactor Ramosa2.1
5ly0_B3e-37361486115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034296.11e-174PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-79LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A3N7HEU11e-158A0A3N7HEU1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s06070.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-61LOB domain-containing protein 20