PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015462.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 350aa    MW: 38859.9 Da    PI: 10.0564
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015462.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP32.43.1e-1096122329
          TCP   3 gkkdrhskihTkvggRdRRvRlsaeca 29 
                   kkdr+ ki+T++g+RdRRvRls+e+a
  CCG015462.1  96 MKKDRNAKIYTSKGLRDRRVRLSIEIA 122
                  59***********************98 PP
2TCP24.21.1e-0712420659133
          TCP  59 ikeltgt.......ssssasec....eaesssssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                  ikel+++       s  ++++c    e ++ ++ + ++s++ a+ s+    kk ++++a  + lakesr+kar+rarert  km+++
  CCG015462.1 124 IKELARNggvgslsS--TSTNCevvsEIGDLEERVLSKSASLACVSTDkRMKKLRNRTA--SFLAKESREKARERARERTLVKMCTR 206
                  667777766655322..223342233222222222244455677777745555555555..899*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-996122IPR005333Transcription factor, TCP
PfamPF036346.1E-4138205IPR005333Transcription factor, TCP
PROSITE profilePS5137010.377185202IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MFSSTNSSIN PFPNLSSTPY NPSPDIIDHE TKDIFLYHHH NPLSIPLNPI STVPAIDTEL  60
NIMAASNNAI MSKQDVHALN GQQYNPSHFL SGKISMKKDR NAKIYTSKGL RDRRVRLSIE  120
IAPIKELARN GGVGSLSSTS TNCEVVSEIG DLEERVLSKS ASLACVSTDK RMKKLRNRTA  180
SFLAKESREK ARERARERTL VKMCTRRLNE PKKCPDSSPS CLNQHQISCK KSAAYNGKSS  240
LKVIAPDQVE GPSSHYSLPN QSPRGNIFEE SLVIRRKLKP SATKGYQHNF PMLRDASCNN  300
NSSASDLPNL AQNWDISSAN IAHSSFRAFI NMNPSTELQL HGKLWGTENN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021200.11e-140PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A2K1X6G01e-135A0A2K1X6G0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s13980.14e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.19e-07TCP family protein