PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015451.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 473aa    MW: 53284.3 Da    PI: 6.5591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015451.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.34.8e-140454681374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v+ g+ e+a+  L+++s+laspdgd+mqR+aayft ALa r+++ +++l kal+p++ s    see+ +++lf+e++P+lk+s++++
  CCG015451.1  45 LIHLLLACANHVAVGSVENANISLEHISHLASPDGDTMQRIAAYFTAALADRILKGWPGLHKALNPKQVS--LISEEILVQRLFFELCPFLKLSYVIT 140
                  689*****************************************************************98..79************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+aI ea+ege++vHiiD++ s+++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++++le+++l +Lrv
  CCG015451.1 141 NEAIIEAMEGEKMVHIIDLNSSEPAQWINLLQTLSARPEGPPHLRITGIHE----KKEVLEQMALRLTEEAEKLDIPFQFNP-IVSKLENIDLGNLRV 233
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll.........................................................desvsleserdevLklvkslsPk 237
                  k+gEalaV++vlqlh ll                                                           s+s + +  ++L++++slsPk
  CCG015451.1 234 KTGEALAVSSVLQLHALLamddemhkrnspsgsknpssnhfqrvlrmnqnrhtlgewletdlvnvyssspdsalsPLSLSASPKMGSFLNALRSLSPK 331
                  **********************************************************************99977333444446777*********** PP

         GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                  ++v++eqe++hn+ s++er+++al++y+alfd+le++++r+s er+kvE++l+g+ei+n++aceg+er+erhe+lekW  rle aGF+++pls++   
  CCG015451.1 332 LMVITEQESNHNGLSLMERVTKALNFYAALFDCLESTVSRASLERHKVEKMLFGEEIKNIIACEGTERKERHEKLEKWILRLELAGFGSIPLSYHGRL 429
                  ************************************************************************************************** PP

         GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  qa++ll+ ++ dgy+++ee+g+l+++W+drpL+svSaWr
  CCG015451.1 430 QANRLLQSFGYDGYKIKEENGCLFICWQDRPLFSVSAWR 468
                  **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.49319448IPR005202Transcription factor GRAS
PfamPF035141.7E-13745468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MVQEEGSSSV TSPHQFFPWM PLPPGIGSPY PWLRELKSEE RGLCLIHLLL ACANHVAVGS  60
VENANISLEH ISHLASPDGD TMQRIAAYFT AALADRILKG WPGLHKALNP KQVSLISEEI  120
LVQRLFFELC PFLKLSYVIT NEAIIEAMEG EKMVHIIDLN SSEPAQWINL LQTLSARPEG  180
PPHLRITGIH EKKEVLEQMA LRLTEEAEKL DIPFQFNPIV SKLENIDLGN LRVKTGEALA  240
VSSVLQLHAL LAMDDEMHKR NSPSGSKNPS SNHFQRVLRM NQNRHTLGEW LETDLVNVYS  300
SSPDSALSPL SLSASPKMGS FLNALRSLSP KLMVITEQES NHNGLSLMER VTKALNFYAA  360
LFDCLESTVS RASLERHKVE KMLFGEEIKN IIACEGTERK ERHEKLEKWI LRLELAGFGS  420
IPLSYHGRLQ ANRLLQSFGY DGYKIKEENG CLFICWQDRP LFSVSAWRFR SCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-67334717382Protein SCARECROW
5b3h_A4e-67294712381Protein SCARECROW
5b3h_D4e-67294712381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015676.10.0PREDICTED: scarecrow-like protein 3 isoform X2
RefseqXP_011015677.10.0PREDICTED: scarecrow-like protein 3 isoform X2
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4KK970.0A0A2I4KK97_POPTR; GRAS family protein
TrEMBLA0A3N7EUY90.0A0A3N7EUY9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]