PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 682aa MW: 75660.9 Da PI: 6.5652 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.9e-12 | 332 | 388 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++ ++g CCG015388.1 332 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALMYWG 388 78*******************87776664446655.77****************9988 PP | |||||||
2 | AP2 | 45.2 | 2.4e-14 | 433 | 482 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g CCG015388.1 433 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 482 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-9 | 332 | 388 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.90E-18 | 332 | 396 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-14 | 332 | 398 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-12 | 333 | 397 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-21 | 333 | 402 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.029 | 333 | 396 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 334 | 345 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-17 | 431 | 490 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.56E-24 | 431 | 489 | No hit | No description |
PROSITE profile | PS51032 | 18.966 | 432 | 490 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-18 | 432 | 489 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-33 | 432 | 496 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 433 | 482 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-6 | 472 | 492 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MKSMDNDDDH NNHNANWLGF SLSPQMKMEV PSGANHHHQT PSPSAAIPTA IPTGFFHSQL 60 PQLDYGIYYG VDDQGENGGF YSPLPVLPLK SDGSLCMMDA LTRTQPQATM VTTSTPKLED 120 FFGCATMETH HYESNDREAM ALSLDSSPGM YYHEDPDHEP NNQNCLNHLQ QNPRQQQQQQ 180 HQHIQVQHYP CYSNFRNNEV LVGEDAKQMA QASDCSLKLP NMGDDGTTGM KNWVSRNYQG 240 NHAMEQKMLR CMVENGGESG PNISAMAYGD LQCLSLSMSP GSQSSCVTGS MQVSPSVNDC 300 AAMETKKRGP GKVDQKQIVH SKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ 360 SRKGRQGGYD MEEKAARAYD LAALMYWGPS THINFPLENY QNEIEEMKNM TRQEYVAHLR 420 RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF 480 RGVNAVTNFV ITRYDVERIM ASSTLLAGEL ARRNKDIGPC DDASTNHSIP STRNSNGESL 540 PSQNSENESD WKMVLYQSSQ QQLDRKASNV MDNYKTQAFL LSPENVIGID CMSSAHQHEF 600 EDSSKMGAHM SNASSLVTSL SSSREGSPDR AMLFGMPPTA ASKLFASPNG DVSSWIPSAA 660 AGQLRPAVSL PHAPVFAAWT DA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210555 | 0.0 | AC210555.1 Populus trichocarpa clone POP104-J03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999924.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-147 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2K1XNS6 | 0.0 | A0A2K1XNS6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s01260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-129 | AP2 family protein |
Publications ? help Back to Top | |||
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