PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015382.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 609aa    MW: 66046 Da    PI: 8.471
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015382.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.23.4e-24219262144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  CCG015382.1 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVE 262
                  79***************************************998 PP
2QLQ60.45e-21150185237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +FT +Q+++L++Q+l+yKy+aan+P+P++Ll +i+k
  CCG015382.1 150 PFTQSQWMELEHQALIYKYIAANVPIPSNLLIPIRK 185
                  8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.3E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-16150184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.282150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663219263IPR014977WRC domain
PfamPF088797.3E-21220262IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDFGVQVGLD GFVGSDTSNS GFASLASSDP EAKQKLYGSG FLKQERPGNI DGDWRCSKLS  60
KTESMLLEQS NTSLLKSSSN FLFADGQQQQ QQMLSFSYPR SAPSAERSSQ NGTLPYFHLT  120
SSAHNRNTGY SSGIYNAASM HGVLTETRWP FTQSQWMELE HQALIYKYIA ANVPIPSNLL  180
IPIRKALDSA GFPSFSAGFL RANTLPWGAF HMGFSSNTDP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHM NRGRHRSRKP VEGHSGHSAA AATTVKPANG TSSSTSSSVV GLRSTVSDSL  300
TIAHNQQQAA SPSNLSASNT LSRMFLTKEN VGERTQDATA LSMLRSNMDL KSKETPFFIS  360
KQQNSYGESL RNEFGLVTSD SLLNHSQKSS SLMSCRNFGS SQDLTDQESV SQHSLRQFMD  420
DWPKSQSDRS AVSWPELDQQ SERTQLSISI PMAPADFMSS TSSPNNEKVT LSPLRLSREF  480
DPIQMGLGVG GGSGSIANEP NQRQANWIPI SWGTSVGGPL GEVLHNTNNN AAAECKTTSS  540
LNLMTYRWDN SPRIGSSPTG VLQKSAFASL SNSSAGSSPR AENKTNEGGS LCNDLLGSTI  600
VHSSSLPAM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733681e-65AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999912.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A2K1XNU70.0A0A2K1XNU7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s01320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-97growth-regulating factor 1