PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG015193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 666aa MW: 73057.9 Da PI: 5.4857 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.3 | 8e-29 | 215 | 268 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl CCG015193.1 215 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268 79*******************.********************************8 PP | |||||||
2 | Response_reg | 73.5 | 8e-25 | 36 | 144 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ + +l+++l+ y ev+++ +e al ll+e++ +D+++ D+ mp+mdG++ll+ i e +lp+i+++a + ++ + + + Ga CCG015193.1 36 VLVVDDDPTCLVILEKMLRTCLY-EVTTCNRAEIALSLLRENKngYDIVISDVHMPDMDGFKLLECIGLEM-DLPVIMMSADDGKNVVMQGVTHGAC 130 89*********************.***************999999**********************6654.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +e+l + CCG015193.1 131 DYLIKPIRIEALKN 144 **********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.8E-182 | 6 | 652 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 7.0E-41 | 33 | 187 | No hit | No description |
SuperFamily | SSF52172 | 7.68E-35 | 33 | 159 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.0E-27 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.353 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.3E-22 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.65E-26 | 37 | 149 | No hit | No description |
PROSITE profile | PS51294 | 10.737 | 212 | 271 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.84E-20 | 213 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 214 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-25 | 215 | 268 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-8 | 217 | 267 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MMNLANSKGS MSTATSGGVW KASDGVPDQF PAGLRVLVVD DDPTCLVILE KMLRTCLYEV 60 TTCNRAEIAL SLLRENKNGY DIVISDVHMP DMDGFKLLEC IGLEMDLPVI MMSADDGKNV 120 VMQGVTHGAC DYLIKPIRIE ALKNIWQHVV RKRRNEWKDL EQSGSVEEGG DRQQKQPEDA 180 DYSSSANEGS WKNSKRRKDE EEEAEERDDT SALKKPRVVW SVELHQQFVA AVNQLGIDKA 240 VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGVSQHQ NGMGSSFISP QEATYGSLSS 300 LNGLDLQTLA TAGQLPAQSL ATLQAAGLGR STAKPRMSMP IVDQRNLFSF ENPKLRFGEG 360 QQQHLNNGKQ TNLLHGIPTT MEPKQLANLH HSAQSLGSMN MQFNAHAGQS SSLLMQMSQQ 420 QSRGQILNET TNSHVPRLSS SIGQPIASNA LASGVLTRNG LAENGRGIGF NPVSQSSTLL 480 NFPLNTTAEL TATSFPLGSA AEVPSLTSKG TFQEEISSEI KGPGGFMPSY DIFSDLQQHR 540 SHDWELQNVG MTFNGSQQSN SVQSSLNVAP SVLSHQGFSS CQRDATEHVN AQSLEHPINT 600 FFAENSMRVK SERVPDAIPQ TALFNEQFGQ EDLTSALLKQ QQQQGDIGLA ENEFDFDGYS 660 LDNIPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 211 | 274 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908138 | 0.0 | FN908138.1 Populus x canadensis mRNA for putative B-type response regulator 12 (rr12 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000515.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X3 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A3N7H294 | 0.0 | A0A3N7H294_POPTR; Two-component response regulator | ||||
STRING | POPTR_0008s22990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |