PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG015090.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 444aa    MW: 50955.8 Da    PI: 5.8322
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG015090.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.2e-35151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sws++g sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF +++F +g+++ll++i+
   CCG015090.1  15 FLTKTYDMVDDPLTNSVVSWSHSGCSFVVWNPPEFAQDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFGNEEFIRGQRHLLKNIH 102
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG015090.1 103 RRKP 106
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-6111104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGSQSNSSN APPPFLTKTY DMVDDPLTNS VVSWSHSGCS FVVWNPPEFA QDLLPKYFKH  60
NNFSSFVRQL NTYGFRKIDP DQWEFGNEEF IRGQRHLLKN IHRRKPVHSH SMQNHGIISP  120
LAETEKQEYE REINRLKHDR NELELQLQRN EAEKQGFEFQ IVSLGERLQS MECRQKQLMS  180
FLVQLMRKPE FASLLMQQSE YHNKKRKLLE LGYFQGDYKE EENENLCSPI ANLDGLPAPM  240
LHPESVEKLD SSLKFLEDFL YAVGESFSEE VCHVGVRSQP SMVIVRELSS SSADGEPWSP  300
RSFPSSPHSR DICSSPELAR CINNVVRQTT PSYLGDDTMP ESSQLQENCK HSRAPASEVI  360
KAPALEMKSP TVVNGANDLF WQHFLTEAPG PHDGQESEGR TERRITDDIR SNTKPDSHER  420
SWWNTNYIDN LAKNMGHIAT AERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-251310418120Heat shock factor protein 1
5d5u_B5e-251310427129Heat shock factor protein 1
5d5v_B5e-251310427129Heat shock factor protein 1
5d5v_D5e-251310427129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139800.0KP013980.1 Populus simonii heat shock transcription factor A4b1 (HsfA4b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033721.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A0N7DK430.0A0A0N7DK43_9ROSI; Heat shock transcription factor A4b1
TrEMBLB9IA410.0B9IA41_POPTR; Uncharacterized protein
STRINGPOPTR_0014s13780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-78heat shock transcription factor A4A