PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG015006.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1045aa MW: 113936 Da PI: 6.9632

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG015006.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.4	1.5e-05	57	113	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F + s++e +e++ + g t +qV+ +F +R++ +k CCG015006.2 57 KRPRDLINPKAVKYMQEVFSIKDAFSKKESREISVQFGATVTQVRDFFASQRTRVRK 113 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.458	54	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-5	56	115	IPR009057	Homeodomain-like
SMART	SM00389	0.0053	56	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.7E-5	57	115	IPR009057	Homeodomain-like
CDD	cd00086	5.70E-4	57	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MEDLTETEIG SSVETFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGAAGA LSIKIGKRPR 60 DLINPKAVKY MQEVFSIKDA FSKKESREIS VQFGATVTQV RDFFASQRTR VRKLIWFSME 120 KAIRVNAHKE PQNGVLMTLD ALMPIDLVPL NSVDPNQVPL SYVCSNPAVL NPVSPNPIHL 180 NSVGPNSVPL NSVSSISAPL NSVSPNPFHL ESVSPNPVPL ISVSPNPVPL NPAILYPVPL 240 DSVAHDPVPL NSTGPSRVDE APFCSTQDDM LPGLDELDKH FVDNIFGLLR KEETFTGQVK 300 LMEWILQIHT LSVLNWFLIN GGVMILVTWL SQAAAEEQTS VLIVTLNVFC HLPLHKAPPE 360 HMSAILRGVN RLRFYRTSDI SNRARVLLSR WSKMFAKSQA MKKSYGVNFS TDAQDMILKQ 420 RQVHEITSYD LKICSIKSHL LALISCSIDE IMGNELWQSD IGNPDGVPAL SLESSENIRK 480 IKSSQALKLL SASTDDLSRK HILGAPSSHT RERRKVQLVE QPGQKTAGRS PQATKAAPVS 540 TGRPMSADDI QKAKMRALFM QNKHGKTVLS SNGNTGVKNG PSSMSASLSL VSKIHIWPKI 600 EEYKKPVIPS LKVSCKVEGS LNPKKEIDSK EPMGGVCSEV KIPWKTPPEI KLNVLWRVGT 660 GENGKEVDVQ KNRNRREVET IYQTVQELPS NPKEPWDLDM DYDDTLTPEI PIEQAPDADG 720 AEIQVSLTEH VNTVVAPSPA PSLPQVGGGS ATEPDLELLA VLLKNPELVF ALTSGHAGNL 780 SSEETVKLLD MIKAGGTGLA GSLNGLGGKV EEVEVSLPSP TPSSNPGTSG WRSEVAKNPF 840 SQKASSGKRV AYTDPGVPTV VPLAENTSLV QPQNQATNIR TPQQQASIPL LSQHHPFSLS 900 QTSIIVPENR QPPMVLQSQQ SYPTNSSMLH TPSSEIVFTM KNLPVNTPSL PNPSDAIGPS 960 MWVETMNNLK PAPSISLTSN PPERWPVPFP RSTSAVPAPT QLQSHINEPP TVYSSWPHAV 1020 DVGPGNGILL GTGTVTGMET EDGTE

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MEDLTETEIG SSVETFQKFL DSQREVFHNQ IDHLRRIVVT QCKLTGAAGA LSIKIGKRPR  60
DLINPKAVKY MQEVFSIKDA FSKKESREIS VQFGATVTQV RDFFASQRTR VRKLIWFSME  120
KAIRVNAHKE PQNGVLMTLD ALMPIDLVPL NSVDPNQVPL SYVCSNPAVL NPVSPNPIHL  180
NSVGPNSVPL NSVSSISAPL NSVSPNPFHL ESVSPNPVPL ISVSPNPVPL NPAILYPVPL  240
DSVAHDPVPL NSTGPSRVDE APFCSTQDDM LPGLDELDKH FVDNIFGLLR KEETFTGQVK  300
LMEWILQIHT LSVLNWFLIN GGVMILVTWL SQAAAEEQTS VLIVTLNVFC HLPLHKAPPE  360
HMSAILRGVN RLRFYRTSDI SNRARVLLSR WSKMFAKSQA MKKSYGVNFS TDAQDMILKQ  420
RQVHEITSYD LKICSIKSHL LALISCSIDE IMGNELWQSD IGNPDGVPAL SLESSENIRK  480
IKSSQALKLL SASTDDLSRK HILGAPSSHT RERRKVQLVE QPGQKTAGRS PQATKAAPVS  540
TGRPMSADDI QKAKMRALFM QNKHGKTVLS SNGNTGVKNG PSSMSASLSL VSKIHIWPKI  600
EEYKKPVIPS LKVSCKVEGS LNPKKEIDSK EPMGGVCSEV KIPWKTPPEI KLNVLWRVGT  660
GENGKEVDVQ KNRNRREVET IYQTVQELPS NPKEPWDLDM DYDDTLTPEI PIEQAPDADG  720
AEIQVSLTEH VNTVVAPSPA PSLPQVGGGS ATEPDLELLA VLLKNPELVF ALTSGHAGNL  780
SSEETVKLLD MIKAGGTGLA GSLNGLGGKV EEVEVSLPSP TPSSNPGTSG WRSEVAKNPF  840
SQKASSGKRV AYTDPGVPTV VPLAENTSLV QPQNQATNIR TPQQQASIPL LSQHHPFSLS  900
QTSIIVPENR QPPMVLQSQQ SYPTNSSMLH TPSSEIVFTM KNLPVNTPSL PNPSDAIGPS  960
MWVETMNNLK PAPSISLTSN PPERWPVPFP RSTSAVPAPT QLQSHINEPP TVYSSWPHAV  1020
DVGPGNGILL GTGTVTGMET EDGTE

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033581.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X1
Swissprot	Q38796	1e-159	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2K1XV19	0.0	A0A2K1XV19_POPTR; Uncharacterized protein
STRING	POPTR_0014s12730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	3e-94	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]